XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAGATT
CTTCCTCTGTTTACAATGTCTGACTTTTCAACACATTGTTCACCTCAAAA
GGCATAGTTTCATCTTGTTCTACATTGGAAACAATCAGTCATTTTTTTTT
CAGAAAGGGCTTACAAATATAAAGAGTGAATAGTTAGAAATATGTGAAAA
TCTAGCACTCTAAATGGCTGCATTTACTTTGATTAGTGCTAGCAGGGAAT
AGCTGTAGATGGTTAATAACTGATGTGTCCAATAGAGTGTTCTAGGAATC
AGTGGTGAGTATTGACCAGAATGCTAACTTAAGCGTGCTTCTGTCACCAG
GAGATGCATGATCAGAAAGGATAGAATGAAGAAAGTGTATGTCAAAATTT
TGTTAACTGAAAGTTTTATATGGATTCACAATTGTTTTACTAATTATTTC
TGTTACACCATGACTATCTGCTTCCCTAAAACACCAACATATAACATCAA
AACTATAGTGTCTCGCCGTTAAATTCTGAGAAAACTACTACTAGAAATTA
CTGAGAAGGAGAATGTAGGGTTGTGTGTCCTATGTCAACTCCACCACAGG
GCATGGCCTCTTGTAGAAGTGTGACACAGCCTTGCTAGTGTGGTGCTGGA
CTGTAGGGGAACCCACAGACACCACTCAGGGTGGGAAAGAACAGTCTGGG
GCTGATGACNATGGGAGCTTGTATGTAGGTCTGCAAGGCTGCAATGAGGT
CAGTGCTAT

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAA
AAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGT
TCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTC
CTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAATAAC
CTAGATGCCCCTCAACAGAAGAATGGATACAGAAAATGTGGTACATCTAC
ACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCT
AGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATT
CACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCC
CAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAA
CTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATT
TGGN

Query= MSMg01no546_b21.b1 MSMg01no546_b21.b1 CHROMAT_FILE:
MSMg01no546_b21.b1 PHD_FILE: MSMg01no546_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:18 2005
         (714 letters)



>mm_chr1_115648959_115650070
          Length = 1112

 Score = 1280 bits (662), Expect = 0.0
 Identities = 698/711 (98%), Gaps = 2/711 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtagattcttcctctgtttacaatgtctgacttttcaacacattgttcacct 63
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtagattcttcct--gtttacaatgtctgacttttcaacacattgttcacct 261

                                                                       
Query: 64  caaaaggcatagtttcatcttgttctacattggaaacaatcagtcatttttttttcagaa 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 262 caaaaggcatagtttcatcttgttctacattggaaacaatcagtcattttttttccagag 321

                                                                       
Query: 124 agggcttacaaatataaagagtgaatagttagaaatatgtgaaaatctagcactctaaat 183
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 322 agggcttacaaatataaagagtgaatagttaaaaatatgtgaaaatctagcactctaaat 381

                                                                       
Query: 184 ggctgcatttactttgattagtgctagcagggaatagctgtagatggttaataactgatg 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggctgcatttacttcgattagtgctagcagggaatagctgtagatggttaataactgatg 441

                                                                       
Query: 244 tgtccaatagagtgttctaggaatcagtggtgagtattgaccagaatgctaacttaagcg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgtccaatagagtgttctaggaatcagtggtgagtattgaccagaatgctaacttaagcg 501

                                                                       
Query: 304 tgcttctgtcaccaggagatgcatgatcagaaaggatagaatgaagaaagtgtatgtcaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgcttctgtcaccaggagatgcatgatcagaaaggatagaatgaagaaagtgtatgtcaa 561

                                                                       
Query: 364 aattttgttaactgaaagttttatatggattcacaattgttttactaattatttctgtta 423
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 562 aattttgttaactgaaagttttatatggattcacaattgttgtactaattatttctgtta 621

                                                                       
Query: 424 caccatgactatctgcttccctaaaacaccaacatataacatcaaaactatagtgtctcg 483
           ||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||
Sbjct: 622 caccatgactatctgcttccctaaagcagaaacatataacatcaaaactatagtgtctcg 681

                                                                       
Query: 484 ccgttaaattctgagaaaactactactagaaattactgagaaggagaatgtagggttgtg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccgttaaattctgagaaaactactactagaaattactgagaaggagaatgtagggttgtg 741

                                                                       
Query: 544 tgtcctatgtcaactccaccacagggcatggcctcttgtagaagtgtgacacagccttgc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgtcctatgtcaactccaccacagggcatggcctcttgtagaagtgtgacacagccttgc 801

                                                                       
Query: 604 tagtgtggtgctggactgtaggggaacccacagacaccactcagggtgggaaagaacagt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tagtgtggtgctggactgtaggggaacccacagacaccactcagggtgggaaagaacagt 861

                                                              
Query: 664 ctggggctgatgacnatgggagcttgtatgtaggtctgcaaggctgcaatg 714
           |||||||||| ||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 862 ctggggctgaggacaatgggagctggtatgtaggtctgcaaggctgcaatg 912


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1112
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1102
Effective search space:   775808
Effective search space used:   775808
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)