Query= MSMg01no546_b24.b1 MSMg01no546_b24.b1 CHROMAT_FILE:
MSMg01no546_b24.b1 PHD_FILE: MSMg01no546_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:19 2005
(611 letters)
>mm_chr1_24064738_24065748
Length = 1011
Score = 725 bits (375), Expect = 0.0
Identities = 390/395 (98%)
Strand = Plus / Minus
Query: 217 aagactattaatatgcacgccttttaattatttgcaagcctgtgtgtccatgcagtcact 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 aagactattaatatgcacgccttttaattatttgcaagcctgtgtgtccatgcagtcact 952
Query: 277 cacatgccacagcacatgtgtcggggctggaggacaacttacaagagttaattctctcct 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 cacatgccacagcacatgtgtcggggctggaggacaacttacaagagttaattctctcct 892
Query: 337 accttgggccccaagaatggaactcaagttgtcaggcttgtgcagcaagggctttgacta 396
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 891 accttgggccccaagaatggaactcaagttgtcaggcttgtgcagcaacggctttgacta 832
Query: 397 ctgcgccatcttgccagctcagggctgtttcttatgaagcattacagctgtgccaaccta 456
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 831 ctgcgccatcttgccagctcagggctgtttcttaagaagcattacagctgtgccaaccta 772
Query: 457 agatggtgaggaacttgtcagagtacacacatcgtttctcttgcagaaatcttgttcctg 516
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 771 agatggtgaggaacttgtcagaatacacacatcgtttctcttgcagaaatcttgttcctg 712
Query: 517 tgatctatagcttgttttatctttggtcatcccttcacatgtcccagattatacggagtc 576
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 711 ttatctatagcttgttttatctttgctcatcccttcacatgtcccagattatacggagtc 652
Query: 577 tgcccagaaggctaaatgagtatttgtccctgaca 611
|||||||||||||||||||||||||||||||||||
Sbjct: 651 tgcccagaaggctaaatgagtatttgtccctgaca 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_b24.g1 MSMg01no546_b24.g1 CHROMAT_FILE:
MSMg01no546_b24.g1 PHD_FILE: MSMg01no546_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:19 2005
(365 letters)
>mm_chr1_23922156_23922926
Length = 771
Score = 646 bits (334), Expect = 0.0
Identities = 359/371 (96%), Gaps = 6/371 (1%)
Strand = Plus / Plus
Query: 1 aactccaagacacacccagtggaaagagggaaccaacttgtacaagctgctctctgaccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aactccaagacacacccagtggaaagagggaaccaacttgtacaagctgctttctgaccg 260
Query: 61 ccacatgtgtat------catgtgcgtgtgcacacgaacacacaatttaattaagagaag 114
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ccacatgtgtatcatgtgcatgtgcgtgtgcacacgcacacacaatttaattaagagaag 320
Query: 115 tggcaggatggttcagcaagtaaaagttctgaccacaggtgcctgccaccctgagtttat 174
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 321 tggcaggatggttcagcaagtaaaagttctgaccacaggtgcctgccacactgagcttat 380
Query: 175 taccttaaaaggcagttcttaccagatcttgattattagttcctgtgagcgtgagttgtt 234
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccttacaaggcagttcttaccagatcttgattattagttcctgtgagcgtgagttgtt 440
Query: 235 ataataaaaacaaacctatatcctcccactctgtcttcctgtttaggtaatctcacccta 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataataaaaacaaacctatatcctcccactctgtcttcctgtttaggtaatctcacccta 500
Query: 295 caagctaccacacatttgatacagacnaggggccctccccacagcctctcaaactgtgtg 354
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 caagctaccacacatttgatacagacaaggggccctccccacagcctctcaaactgtgtg 560
Query: 355 ctctttccttt 365
|||||||||||
Sbjct: 561 ctctttccttt 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 771
Length adjustment: 9
Effective length of query: 356
Effective length of database: 762
Effective search space: 271272
Effective search space used: 271272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
