XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTACCCCT
TTAAAACATTTGTCTTCAAGGAGGGAAAGGAGTAATGGTGGGAGTGAGTG
AAATATAATTAATACATCTATTTATTAAAATGTCTCAGTCAAACATATCA
GCTTATATGCTAAAAATTTATGTTGCAATGACATGAAGAAAACAATTGAA
TGTGGTTTATACTTCCTGCTCACCAGTGTGCTGGAATGCACATGTCCCCT
CAAGCCATAACACAGAGTTCTCTCAGAGCACACATGTAAGTTTCTGGTTT
TGCCTATAGGGTGTCTTCCTCCATTCTCTGCTTATGGAATCTCAATGTTT
TTACTCTTGTTTCTGAGTAAGTCTGTGGAACCCCTTTCTGAGGGGACCAA
AGCTGCCATTACTCTTTTTCCCTTGTTCTCATGGGTAGAGGCATCTGCCA
TAATCATCTGATGTGCTATATTAAGTAATTTCTAACCATTTTGTCACAAC
TCCAAAATCATTTTAAAAGCCCCACTAGTGCCGGGCATGGTGGCGCACGC
CTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGA
GGGCAGCTTGGTCTACAAAGTGAGTGCCAGGACAGCCAGGGCTACACACA
GAGAAACCCTGTCTCGAAAAACCGAAAAAAAAAAAAAAAGCCCCACTAGT
GACCTGACACCTCTCAGAGGCAGAGATATTTCACACAATTGCTN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGGGATCCTGCTAGAAGTGATCAAGGGTGATTCCTT
GTGAAATGTGTGTTTTGTTTTGTTTTTTTTGTTTGTTTGTTTGTTTGTTT
TTTGCTATTAGTAGTTGGCACTCAGAAATTGGTATTTACAAGGAGGGGGC
TTATGTTTCCACAGGGAGGAATGTAGTATGTTCCTCCAGCATCTGCTTAT
TCCACGAGGAATGTGGACCGGAAGCAAGCAAAGGCCATAAAATATAGTCT
GCTAAGGGCTAGAGATGAAGGTTTAGGGGTTGGATATGGAAGAGAGGAGG
GAGAATCAACATCTGAATTGACCTACATTCCTGGGCTACTTGCAGTTCTA
CTGAGCTTGGCTGGTGAGTTCCCAGGGAATGCCTATTGAAGTTGGAGGAT
AGGATAATAGGACGAGTGGTGAGGAAGGCTGGAGGAGATTTACTTTATCT
GTTGGAGATGAAGGTCAGAGAAGAGGCAGTGTCAGTAGAATGTATTCTGA
TGCAGAGATGGGAGTATCATTTGGAAATTGGATTAGGAGGAGCAGAAGGA
AAGGTGAACAAACTTGCAGTTAGGCTACCCGCCTCCATGGCCAGTGTGGC
CTGAGTATACCCAGGAACTGCTTGCTGTTTTTGGGGACTAGGATAAGGCC
ATGAGTCGGCAGAAGGAAGGTTGGAGGGATCAATCTGTGTGATCCAN

Query= MSMg01no546_c18.b1 MSMg01no546_c18.b1 CHROMAT_FILE:
MSMg01no546_c18.b1 PHD_FILE: MSMg01no546_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:22 2005
         (682 letters)



>mm_chr1_3374436_3375518
          Length = 1083

 Score = 1216 bits (629), Expect = 0.0
 Identities = 669/687 (97%), Gaps = 10/687 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaatt-acccctttaaaacatttgtcttcaaggagggaaaggagtaatggtgggagtgag 63
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacccctttaaaacatttgtcttcaaggagggaaaggagtaatggtgggagtgag 264

                                                                       
Query: 64  tgaaatataattaatacatctatttattaaaatgtctcagtcaaacatatcagcttatat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaaatataattaatacatctatttattaaaatgtctcagtcaaacatatcagcttatat 324

                                                                       
Query: 124 gctaaaaatttatgttgcaatgacatgaagaaaacaattgaatgtggtttatacttcctg 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 325 gctaaaaatttatgttgcaatgacatgaagaaaacaattgaatgtggtttatgcttcctg 384

                                                                       
Query: 184 ctcaccagtgtgctggaatgcacatgtcccctcaagccataacacagagttctctcagag 243
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcaccagtttgctggaatgcacatgtcccctcaagccataacacagagttctctcagag 444

                                                                       
Query: 244 cacacatgtaagtttctggttttgcctatagggtgtcttcctccattctctgcttatgga 303
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 445 cacacatgtaagtttctggttttacctgtagggtgtcttcctccattctctgcttatgga 504

                                                                       
Query: 304 atctcaatgtttttactcttgtttctgagtaagtctgtggaacccctttctgaggggacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atctcaatgtttttactcttgtttctgagtaagtctgtggaacccctttctgaggggacc 564

                                                                       
Query: 364 aaagctgccattactctttttcccttgttctcatgggtagaggcatctgccataatcatc 423
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagctgccattattctttttcccttgttctcatgggtagaggcatctgccataatcatc 624

                                                                       
Query: 424 tgatgtgctatattaagtaatttctaaccattttgtcacaactccaaaatcattttaaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgatgtgctatattaagtaatttctaaccattttgtcacaactccaaaatcattttaaaa 684

                                                                       
Query: 484 gccccactagtgccgggcatggtggcgcacgcctttaatcccagcactcgggaggcagag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gccccactagtgccgggcatggtggcgcacgcctttaatcccagcactcgggaggcagag 744

                                                                       
Query: 544 gcaggcagatttctgagttcgagggcagcttggtctacaaagtgagtgccaggacagcca 603
           |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 745 gcaggcggatttctgagttcgaggccagcttggtctacaaagtgagtgccaggacagcca 804

                                                                       
Query: 604 gggctacacacagagaaaccctgtctcgaaaaaccgaaaaaaaaaaaaaaa--------g 655
           |||||||||||| |||||||||||||||||||||| |||||||||||||||        |
Sbjct: 805 gggctacacacaaagaaaccctgtctcgaaaaacc-aaaaaaaaaaaaaaaaaaaaaaag 863

                                      
Query: 656 ccccactagtgacctgacacctctcag 682
           |||||||||||||||||||||||||||
Sbjct: 864 ccccactagtgacctgacacctctcag 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1083
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1073
Effective search space:   721056
Effective search space used:   721056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)