TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGGTGCTAGTCAGGGCAGTGAGTATGAGTCTTTGGAAGGAGGATGAT
TAGGACTAAATCTTCTATTAGCAGTGTTTGCCTCTCCTCCAAGCAAGGCT
TTCTTACAGGCTGGGAACGTCTTTATGACCTCAACTACAGAGGAGAAAGT
CTTCACCCACAGCCTTCCTAATGGTTTTACTTAAGACCTCTTGTAATCCT
GCTGTCTTCTGGATGACAAGAACAATAGTTATTTCAGGGTATGTGCTTCT
GTATCATTGAGAATGAGCTAAACCACACAAACGGATGGTGCCAATGAAAA
GAATTAATACTAGGTTCCAAAAAGAAGGCAATTGCCTCTCATCAATCATA
CTTATATAGATTCTGAGAGAATTGTTGCAAGTGATGTCAACCTGAGTAAA
AGTTACTACTGGAAGCCACAGGTTCTCTATGTCACCACACATATTAGAAC
ATGACTACCCAAAAGGAGCATGGCACCAGAAAGAAAATGCTTCCTTGGCA
CATCATATCATACCAGTCTTTTCCCAATAGATCCCCAGAGAAGTCTGAAG
ACACAGCTGACCACTTCTCGGAACTGAATGCTGCCTTGTGCTCATTCAAA
ATACAATTACATGACAAGTCCATACTCCCAGACTCTCAGCAGAGAATTCC
AAGTCTGGTACTCTCAGCACAGGCCAGA

TGGGGAAATGTATGAGAGAGAGTAGAGGGAGCNNNNNNAGTGGNNAGCAG
AGGTAGGGTTTTTTGNGGAGTTNNGNTGTTTAGATTATGNNCGCTAATGA
CTAGTGNNGGTAGGCCTGGGTCGGCCTGCCTGGGCCGCTCGTAACATTTA
GTGTGAACACTTTATAGAAGGAATCNNCGCGGAATTTNCCATCATCCTTT
CACTGGATTACCTNAAGCCTATGGGCTTTATTAACTGTGGATTTTAAGTT
AAAAAGAATTTCTTTTTTCACAAATTCACCTTTTTATAAGGAATTAAGAA
ATTTTCCCAAGAAATATGGGGAAAAGGGGTTTTGGCTTTTTTTACACGGG
GGGCCCCCAAAATTTTCACCCCCCTTCTTTTTTTTTTTCCAAACCCAAAG
AAAATTGTGTTCCCCCTGGTGGGTTAATAAAAAACCCTTTTTTTTCCCCC
AACAAAAAGGAAAAAATATTTTTTTTTTAAAAAAAAAAAAACACCCCCCC
CCCCCCCCTCTTTTAAAAAACACCAAAAATATGTTTTTTTTTTTTTGTGG
GAAAAACACACCCACCCTCCCCTCTCTTTTGTGTAAAAAAATCTTAATTT
TTTTTTCCTTAAAAAAAATATAAACCATTTTAGTTGGTTTACGAAAAAAA
CCTTGGTCGGGGGTATTTTTCACAATTTTGCGCGATGTTCACCAATCGTA
TGTTTTTT

Query= MSMg01no546_i06.b1 MSMg01no546_i06.b1 CHROMAT_FILE:
MSMg01no546_i06.b1 PHD_FILE: MSMg01no546_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:50 2005
         (684 letters)



>mm_chr1_49413429_49414513
          Length = 1085

 Score = 1301 bits (673), Expect = 0.0
 Identities = 679/681 (99%), Gaps = 1/681 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctggtgcta-gtcagggcagtgagtatgagtctttggaaggaggatgattagg 63
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggtgcaaagtcagggcagtgagtatgagtctttggaaggaggatgattagg 264

                                                                       
Query: 64  actaaatcttctattagcagtgtttgcctctcctccaagcaaggctttcttacaggctgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actaaatcttctattagcagtgtttgcctctcctccaagcaaggctttcttacaggctgg 324

                                                                       
Query: 124 gaacgtctttatgacctcaactacagaggagaaagtcttcacccacagccttcctaatgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaacgtctttatgacctcaactacagaggagaaagtcttcacccacagccttcctaatgg 384

                                                                       
Query: 184 ttttacttaagacctcttgtaatcctgctgtcttctggatgacaagaacaatagttattt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttacttaagacctcttgtaatcctgctgtcttctggatgacaagaacaatagttattt 444

                                                                       
Query: 244 cagggtatgtgcttctgtatcattgagaatgagctaaaccacacaaacggatggtgccaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagggtatgtgcttctgtatcattgagaatgagctaaaccacacaaacggatggtgccaa 504

                                                                       
Query: 304 tgaaaagaattaatactaggttccaaaaagaaggcaattgcctctcatcaatcatactta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaaaagaattaatactaggttccaaaaagaaggcaattgcctctcatcaatcatactta 564

                                                                       
Query: 364 tatagattctgagagaattgttgcaagtgatgtcaacctgagtaaaagttactactggaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatagattctgagagaattgttgcaagtgatgtcaacctgagtaaaagttactactggaa 624

                                                                       
Query: 424 gccacaggttctctatgtcaccacacatattagaacatgactacccaaaaggagcatggc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gccacaggttctctatgtcaccacacatattagaacatgactacccaaaaggagcatggc 684

                                                                       
Query: 484 accagaaagaaaatgcttccttggcacatcatatcataccagtcttttcccaatagatcc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 accagaaagaaaatgcttccttggcacatcatatcataccagtcttttcccaatagatcc 744

                                                                       
Query: 544 ccagagaagtctgaagacacagctgaccacttctcggaactgaatgctgccttgtgctca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccagagaagtctgaagacacagctgaccacttctcggaactgaatgctgccttgtgctca 804

                                                                       
Query: 604 ttcaaaatacaattacatgacaagtccatactcccagactctcagcagagaattccaagt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttcaaaatacaattacatgacaagtccatactcccagactctcagcagagaattccaagt 864

                                
Query: 664 ctggtactctcagcacaggcc 684
           |||||||||||||||||||||
Sbjct: 865 ctggtactctcagcacaggcc 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1085
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1075
Effective search space:   724550
Effective search space used:   724550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)