XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCTTTC
CTAAGTTTTGTATCTCCAGAGTTGTCTCACTTTGGGTTTTCTTTATTGTT
TCTACTTCCCTTTTTAGGTCTTCCATGATTTTGTTAAATTCTATCACCTG
TTTGTTTGTGTTTTCCTGTAATTCTTTAAGGGTTTATACCTCTTTAGCAG
TGTTATCCTGTATTTCTTTAAGTGAGTTATTAATGCCCTTCTTAAAGTCC
TCTACCATCATCTTGAGATATGATTTTAAATCTGAGTCTTGCTTTTCGGG
TGTGTTGGGGCATCCAGGACTGGCTGAGGTGGGAGTGCTGGGTTCTGATG
ATGGTGAGTGGTCTTGGTTTCTGTTAGCAAGATTCTTAAGTTTTCTTTTC
GCCATCTGGTAATCTCTGGTGTTAGTTGTTATAGTTGTCTCTGGTTGGAG
CTTGTTACTCCTATGATTCTGTTTGCCTCTGTCACCAGTCCTGGGAGTGC
AGCTCTCTTCCTGAGTCTCAGTGGTCAGAGTACTCTCTGCAGGCAAGCTC
TCCTCTTGCAGGGAAGGTGCACAGATGTCTGGAGTTCAGACCTGTCTCCT
GGCTGAAGATGAAGGCCTGAAACATGGCCTGTCCTGAAGATTCGTTGTGT
CTGCAGTCTTTGTGCTCACCTGCAGAGACTGGTCTCTGATGGACCTGGGA
TACCAGATGGCTCTCTCACCTGCACTGGTGGTCAGAGCCCTCCCAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCTTGATCATTCCTATAATTTTTCATAATA
AGAATTTCTTCTTTTCAGTTGTGAATATAAAATATGGAAAATATTTTCAC
TATAAAAAAGTAAAAGTTTACATTGTTTCTATATTCTTGTTATAGTATAC
CTTTATTATTTATCAAAGTACTGAAACATCTCTACATTCAGCTAAAAATT
AATGAGTGGTATACAATTGTTGATTATAACTAATAACTTTATTTTATTTT
GCATTAATATCAAATATTCCTAATTACCATAGACACCATAAGTGTAGGTT
ACCAATAAATATTATTCTGGTAAGAACTTTATTTGCTGCTATATGTATGC
TATTAATTAATTTCATTATTTGTTTAAGTTAAATTACATATTTTAATTTA
TTATACAAAATATCATTAAAGTGACTTATCTCTTCAACAAAAATTTACTC
AAGATATATGAATTTGAATGAAATCCCAGAAAATGAGAAAAATGTTGTAT
TCCTTTTGCATCCAGAAAATTAGAAAAATAATCAGATTTCCCGATAGTCA
CCTGAAAGTAAAGTATCCTAAAGAAACAACAACAACAAAAAAAAAGGTTG
TTGCCCATCTTGAAACACATGATTGCAGCTTTTCCCACAGTGCTTTTAGT
CACATTGCAAAACCACACTAATCCATAAGTTTTCCAGTN

Query= MSMg01no547_e17.g1 MSMg01no547_e17.g1 CHROMAT_FILE:
MSMg01no547_e17.g1 PHD_FILE: MSMg01no547_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:53 2005
         (669 letters)



>mm_chr1_17733016_17734084
          Length = 1069

 Score = 1002 bits (518), Expect = 0.0
 Identities = 528/532 (99%), Gaps = 2/532 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcttgatcattcctataatttttcataataagaatttcttcttttcagttgtgaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tttcttgatcattcctataatttttcataataagaatttcttcttttcagttgtgaatat 473

                                                                       
Query: 61  aaaatatggaaaatattttcactataaaaaagtaaaagtttacattgtttctatattctt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaaatatggaaaatattttcactataaaaaagtaaaagtttacattgtttctatattctt 413

                                                                       
Query: 121 gttatagtatacctttattatttatcaaagtactgaaacatctctacattcagctaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gttatagtatacctttattatttatcaaagtactgaaacatctctacattcagctaaaaa 353

                                                                       
Query: 181 ttaatgagtggtatacaattgttgattataactaataactttattttattttgcattaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttaatgagtggtatacaattgttgattataactaataactttattttattttgcattaat 293

                                                                       
Query: 241 atcaaatattcctaattaccatagacaccataagtgtaggttaccaataaatattattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 atcaaatattcctaattaccatagacaccataagtgtaggttaccaataaatattattct 233

                                                                       
Query: 301 ggtaagaactttatttgctgctatatgtatgctattaattaatttcattatttgtttaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ggtaagaactttatttgctgctatatgtatgctattaattaatttcattatttgtttaag 173

                                                                       
Query: 361 ttaaattacatattttaatttattatacaaaatatcattaaagtgac--ttatctcttca 418
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 172 ttaaattacatattttaatttattatacaaaatatcattaaagtgactgttatctcttca 113

                                                                       
Query: 419 acaaaaatttactcaagatatatgaatttgaatgaaatcccagaaaatgagaaaaatgtt 478
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 112 acaaaaatttactcaagatatatgaatttgaatgaaatcccagagaatgagaaaaatgtt 53

                                                               
Query: 479 gtattccttttgcatccagaaaattagaaaaataatcagatttcccgatagt 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  gtattccttttgcatccagaaaattagaaaaataatcagatttcccgatagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)