Query= MSMg01no547_f05.b1 MSMg01no547_f05.b1 CHROMAT_FILE:
MSMg01no547_f05.b1 PHD_FILE: MSMg01no547_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:56 2005
(639 letters)
>mm_chr1_65000888_65001925
Length = 1038
Score = 1054 bits (545), Expect = 0.0
Identities = 560/565 (99%), Gaps = 1/565 (0%)
Strand = Plus / Minus
Query: 7 gaattctttattgcctcacagcagcctcactcacgcttgcctttagtgctgtgacagtac 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaattctttattgccacacagcagcctcactcacgcttgcctttagtgctgtgacagtac 506
Query: 67 gatggcttgtggtgttttatttggtagattcacgcactggaggtttatcagaaaacctgc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatggcttgtggtgttttatttggtagattcacgcactggaggtttatcagaaaacctgc 446
Query: 127 aaacacattgttaaaattgacacccaagactctgggacaggcatagctccatcacgacct 186
| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agacacattgtt-aatttgacacccaagactctgggacaggcatagctccatcacgacct 387
Query: 187 tctgctaactttgtttttgtgttttcctctaatccccacaaccatcacagaagtcatgtc 246
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 386 tctgctaactttgtttttgtgttttcctctaatcctcacaaccatcacagaagtcatgtc 327
Query: 247 tacctgactatgtatgttatagtacatgacacacttgagattagagtggagaggttgtca 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tacctgactatgtatgttatagtacatgacacacttgagattagagtggagaggttgtca 267
Query: 307 aggtggatctaattgaagagttcccataaaagtgtagagctttctatgactgggaaatca 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aggtggatctaattgaagagttcccataaaagtgtagagctttctatgactgggaaatca 207
Query: 367 agaagactcaacatactgtagctgatttgaagatggacgatatcattgctgaggactcta 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agaagactcaacatactgtagctgatttgaagatggacgatatcattgctgaggactcta 147
Query: 427 ggtagccttgaggaatttggaaggtgtaaaactaccaagagtggccccctggctgacaac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ggtagccttgaggaatttggaaggtgtaaaactaccaagagtggccccctggctgacaac 87
Query: 487 caacaggaagttaccaaaaccaggatttttgtcaacaatccagatgactttgaatttgga 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 caacaggaagttaccaaaaccaggatttttgtcaacaatccagatgactttgaatttgga 27
Query: 547 ctatttaccagaatttctagataag 571
|||||||||||||||||||||||||
Sbjct: 26 ctatttaccagaatttctagataag 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1038
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1028
Effective search space: 646612
Effective search space used: 646612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_f05.g1 MSMg01no547_f05.g1 CHROMAT_FILE:
MSMg01no547_f05.g1 PHD_FILE: MSMg01no547_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:56 2005
(681 letters)
>mm_chr1_64856881_64857961
Length = 1081
Score = 1263 bits (653), Expect = 0.0
Identities = 676/685 (98%), Gaps = 5/685 (0%)
Strand = Plus / Plus
Query: 1 aatgtaagtaactttaagtgagccatccttacttcttggaggagaaaccaactacacgta 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aatgtaagtaacttcaagtgagccatccttacttcttggaggagaaaccaactacacgta 257
Query: 61 acacaaagagaaactggcaagaatgttcaatccatctgtttcttttactattgttgttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acacaaagagaaactggcaagaatgttcaatccatctgtttcttttactattgttgttgt 317
Query: 121 tattattattattattatttgt---tttgttt-ttttttaatgagatgcagtctcactag 176
| |||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct: 318 tgttattattattattatttgtttgtttgtttgtttttt-atgagatgcagtctcactag 376
Query: 177 gaagctctgactggcctggaactcactgtgtagaccagactggctccaaacttagagatc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaagctctgactggcctggaactcactgtgtagaccagactggctccaaacttagagatc 436
Query: 237 accagtctcttcctttttagtgctgggactaagtcttatattcaaaacttaacttaaaac 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 accagtctcttcctttttagtgctgggactaagtcttatattcaaaacttaacttaaaac 496
Query: 297 aacaaacccttttagaagaataacgccagagttgcagatgccctgaggacacacaggaag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aacaaacccttttagaagaataacgccagagttgcagatgccctgaggacacacaggaag 556
Query: 357 aatgtcatcctcatgcctttccaaaggcgagttggacagaccaatgttgctggccttgta 416
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aatgtcaccctcatgcctttccaaaggcgagttggacagaccaatgttgctggccttgta 616
Query: 417 tctgagctggtctgtgtcacacttctgtaatgctgctatagactgggaaacccttcagat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tctgagctggtctgtgtcacacttctgtaatgctgctatagactgggaaacccttcagat 676
Query: 477 cctcttaactagttggttaatttgaaacatgtcagcattcatgaagtaacaggacaatca 536
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cctcttaactagttggttcatttgaaacatgtcagcattcatgaagtaacaggacaatca 736
Query: 537 acactatggaatgcatacacaatgaggatgctaaactcaaggttgtttctaagcatagaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 acactatggaatgcatacacaatgaggatgctaaactcaaggttgtttctaagcatagaa 796
Query: 597 tcttcttatccacatctggatgtagctcagaagggtacactggtcaaagagtcttggagt 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tcttcttatccacatctggatgtagctcagaagggtacactggtcaaagagtcttggagt 856
Query: 657 gccatgctttctctacttaaatacc 681
|||||||||||||||||||||||||
Sbjct: 857 gccatgctttctctacttaaatacc 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
