Query= MSMg01no547_g08.b1 MSMg01no547_g08.b1 CHROMAT_FILE:
MSMg01no547_g08.b1 PHD_FILE: MSMg01no547_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:01 2005
(666 letters)
>mm_chr1_59958094_59959158
Length = 1065
Score = 986 bits (510), Expect = 0.0
Identities = 522/526 (99%), Gaps = 1/526 (0%)
Strand = Plus / Minus
Query: 7 ggaattcagtttgccgtacggactcttgatagattctgtttctctcttatcttctccagc 66
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 525 ggaattcagtttgccgtagggactcttgatagattctgtctctctcttatcttctccagc 466
Query: 67 tgcctctccttcatctgcagttttccaagaaacaaggagcttcctagattagtcttctgg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tgcctctccttcatctgcagttttccaagaaacaaggagcttcctagattagtcttctgg 406
Query: 127 ccctctgctttccaccgataggtcatctcctgagtcaaccctctgaggactttccttgtc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ccctctgctttccaccgataggtcatctcctgagtcaaccctctgaggactttccttgtc 346
Query: 187 tttccttttccaaaacccccataaatttatctcagcaaacatttttcatacccaaagcac 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 -ttccttttccaaaacccccataaatttatctcagcaaacatttttcatacccaaagcac 287
Query: 247 ccttatttgttggttatccccttttctccagattttttttattgtactaaaatacatata 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ccttatttgttggttatccccttttctccagattttttttattgtactaaaatacatata 227
Query: 307 atatataatgtattacttcagggcaagggagatagttcaatgagagaacactggtctagc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 atatataatgtattacttcagggcaagggagatagttcaatgagagaacactggtctagc 167
Query: 367 atgtgtggggccatgggtttgatgcccaggacacctcaaaaatacttcctcgtctacagt 426
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 166 atgtgtggggccatgggtttgatacccaggacacctcaaaaatacttcctcgtctacagt 107
Query: 427 ttagtacgatttgcatgactatctgtgcagccttctccagaaagatctttctcaacacac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ttagtacgatttgcatgactatctgtgcagccttctccagaaagatctttctcaacacac 47
Query: 487 tgaaacaccccctccccctccctcctgctcctgaaaaccaccattg 532
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 tgaaacaccccctccccctccctcctgctcctgaaaaccaccattg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1065
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1055
Effective search space: 692080
Effective search space used: 692080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_g08.g1 MSMg01no547_g08.g1 CHROMAT_FILE:
MSMg01no547_g08.g1 PHD_FILE: MSMg01no547_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:01 2005
(511 letters)
>mm_chr1_59760420_59761330
Length = 911
Score = 953 bits (493), Expect = 0.0
Identities = 503/507 (99%), Gaps = 2/507 (0%)
Strand = Plus / Plus
Query: 7 aattcaccagcctggtctgtagagtttctggacaaccagggctatacaaataaccttgtc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aattcaccagcctggtctgtagagtttctggacaaccagggctatacaaataaccttgtc 264
Query: 67 tcagagag--gggggaaaaacagtttcaaaatactacatcttcaaatgagattattttta 124
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcagagagaggggggaaaaacagtttcaaaatactacatcttcaaatgagattattttta 324
Query: 125 atcccattctcaattggcaccttttctgaagtgaatttataagatgctttatcttatttt 184
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcccattctcaattggcaccctttctgaagtgaatttataagatgctttatcttatttt 384
Query: 185 tacctggatgttttttgaagaaagtttatttctaaattaagcctttacataaggaaagat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacctggatgttttttgaagaaagtttatttctaaattaagcctttacataaggaaagat 444
Query: 245 aacgctgggaaatgattctgcttcatctgcaaaaattccataggggacaggaagaactat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacgctgggaaatgattctgcttcatctgcaaaaattccataggggacaggaagaactat 504
Query: 305 gcatctgcctctctctctgaattcctgtctgaggaagtagaagcagaagtaaaagcagct 364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 gcatctgcctctctctctgaattcctgtctgaggaagtagaagcagaagtgaaagcagct 564
Query: 365 gcagagatatctatgggaacagaggtttctgaagaagatatttgcaacattctacatctg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcagagatatctatgggaacagaggtttctgaagaagatatttgcaacattctacatctg 624
Query: 425 tgtacgcaggtacattacatccacagggggcagttgaggtctaagtctgataatttgcag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtacgcaggtacattacatccacagggggcagttgaggtctaagtctgataatttgcag 684
Query: 485 gtggcaatgatgatttttcttatttgt 511
|||||||||||||||||||||||||||
Sbjct: 685 gtggcaatgatgatttttcttatttgt 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
