BAC Information

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BAC

Clone NameMSMg01-547H05
Chromosome1 (Build37)
Map Location 183,804,400 - 183,804,744
singlet/doubletsinglet
Overlap geneEG433384
Upstream geneLefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr
Downstream geneEnah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8, 4922505E12Rik, Susd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547H05.T7 (MSMg01no547_h05.b1)MSMg01-547H05.TJ (MSMg01no547_h05.g1)
ACCAG612037AG612038
length755763
length of high quality
(start - end)		588 (30 - 617)650 (60 - 709)
definitionCHROMAT_FILE: MSMg01no547_h05.b1 PHD_FILE: MSMg01no547_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:05 2005CHROMAT_FILE: MSMg01no547_h05.g1 PHD_FILE: MSMg01no547_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTATACGACTCCTATAGGTCGAGGATCCGCGGAATTCCCTTTTTAG
CTCTGTGCCCCATTTTTTAATTGGGTTGGTTGGGTTGTTGATGTTTAACT
TCTTGAGTTCTTTATAAATTTTGGCTATTAGCCCTCTGTCAGATGTAGGG
TTGGTAAAGATAATTTAGAATTCTTTCTTTCTCTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTGGTTTTTCGAGACAGGGT
TTCTCTCTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACTAGGCTG
GCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTACTGGGATTA
AAGGCGTGCGCCACCACGCCCGGCTTAGAATTGTTTCTAATGCATAGTGA
TACACCTAAGCTATTATGATACTGAAAAAAATACTCTTACATCTATAATT
TATTTATTAAATGTATATGGGTGTCATCTATATATATGCCTGTACGCCAC
AAGAGGGCATCAGATCCTATAAAGCAATAGTTATAGACAGATTTGAGACA
CACACACACACACACACACACACACACACCCATGTAGGTGCTGAGAATTG
AACCCAGGATCTCAGAAGAGCTGCCAGTGTTCTTAACCACTGAGCCATCT
CTCTATCCCCCTTACATCTTAAATACAGATAAGGAATTTGGTGAAAATAA
CATGAACCTCAAGAGAGACATTTAAGTCTTTAGGGTTAGCCTTCTAACCC
TGCAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCTACAATTGTCTGGGGATATATGTGGTCCTTTTCACAAAA
GACTCACTGTCTACAAATACTTAATAGGGTATTTGAAAGGACCGGAGTCA
ACACAGGATACCCCAAGACCAAATTCTCAACACAAAGGAGACTTATTTGC
CCCAAAGAGACAGAGGGCAGGGAAGAGAGACAAAGACAGGAGACAGAGGA
CAGGGAGCCAGGGAAGGGAACAAAGGAGAGGGGGGTGGATATCTGTCCTG
AGGGACAGAGGACTGCCTCTGGATAGAGAAGAGACAGGTGTGGCCCATAG
GACATACCAGTTCATAAAGGGAAAGGGGGAAACCCTGTGCTAGGAGGAGT
TGGTTTGTTTTAATTGGCCGTGTTAATCAGGTGAGCCCAAAGTGGGCTTT
TGATGTTTAGACTTCGATACTTTGATAGCTGGACCTGGGTGGTCATGGTA
GGTGAAAGAAATGTGAGGTGAAGGCCCTGGCTCTGCATTTCACTGGAGGG
GGCAGGCTACTGGGTCATTCATTCATTCATCCAACAACTATTGACCTAGA
GCAGATGGAGAAAATGACCTTTGAAGGTGGAATGGGCAGGGTCACATTCA
GGTGTAGGAGAATATACAGGCTGCGAGAATATGATTAAAATTCACTAGTT
TGATTTATTTGGTCAGTGCTGTCTTCCACCAGAACACGCCTTCCCGGACC
ACTGGGAGCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_h05.g1 MSMg01no547_h05.g1 CHROMAT_FILE:
MSMg01no547_h05.g1 PHD_FILE: MSMg01no547_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:05 2005
         (650 letters)



>mm_chr1_183803695_183804744
          Length = 1050

 Score =  594 bits (307), Expect = e-174
 Identities = 332/345 (96%), Gaps = 8/345 (2%)
 Strand = Plus / Minus

                                                                        
Query: 314  aagggggaaaccctgtgctaggaggagttggtttgttttaattggccgtgttaatcaggt 373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 aagggggaaaccctgtgctaggaggagttggtttgttttaattggccgtgttaatcaggt 991

                                                                        
Query: 374  gagcccaaagtgggcttttgatgtttagacttcgatactttgatagctggacctgggtgg 433
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  gagccaaaagtgggcttttgatgtttagacttcgatactttgatagctggacctgggtgg 931

                                                                        
Query: 434  tcatggtaggtgaaagaaatgtgaggtgaaggccctggctctgcatttcactggaggggg 493
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  tcgtggtaggtgaaagaaatgtgaggtgaaggccctggctctgcatttcactggaggggg 871

                                                                        
Query: 494  caggctactgggtcattcattcattcat--------ccaacaactattgacctagagcag 545
             || ||||||||||||||||||||||||        ||||||||||||||||||||||||
Sbjct: 870  tagactactgggtcattcattcattcattcattcatccaacaactattgacctagagcag 811

                                                                        
Query: 546  atggagaaaatgacctttgaaggtggaatgggcagggtcacattcaggtgtaggagaata 605
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810  atggagaaaatggcctttgaaggtggaatgggcagggtcacattcaggtgtaggagaata 751

                                                         
Query: 606  tacaggctgcgagaatatgattaaaattcactagtttgatttatt 650
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750  tacaggctgcgagaatatgattaaaattcactagtttgatttatt 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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