BAC Information

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BAC

Clone NameMSMg01-547J19
Chromosome1 (Build37)
Map Location 111,627,231 - 111,627,471
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626474
Downstream geneEG666508, Cdh7, LOC100041429, EG626652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547J19.T7 (MSMg01no547_j19.b1)MSMg01-547J19.TJ (MSMg01no547_j19.g1)
ACCAG612158AG612159
length744789
length of high quality
(start - end)		688 (38 - 725)392 (71 - 462)
definitionCHROMAT_FILE: MSMg01no547_j19.b1 PHD_FILE: MSMg01no547_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:17 2005CHROMAT_FILE: MSMg01no547_j19.g1 PHD_FILE: MSMg01no547_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
ACAATGTTGAATAGGTAGGTTGAGAGTAGACAGCCTTGTCTAGTCCCTGA
TTTTAGTGGGATTGCTTTCAGCTTCTCACCATTTACTTTGAATTTGGCTA
CTGGTTTGCTGTAGATTGCTTTTATCAAGTTTAGATATGGGCCTTTCCAA
GACTTTTATCATGAATGGGTGTTGGATTTTGTCAAATGCTTTCGCAGCAT
CTAAGGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATACTGG
ATTACATTGATGGATTTCCGTATATTGAACCATCCCTGCATCCCTGGGAT
GAAACCTACTTGGTCAGGATGGATGATTGTTTTGATGTGTTCTTGGATTC
GGTTTGCATCGATATTCATAAGGGAATTTGGACTGAAGTTCTCTATCTTT
GTTGGGTCTTTTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAAT
GAGTTGGGTAGAGTACCTTCCGTTTCTATTTTGTGGAATAGTTTGTGAAG
AACTGGAATTAGGTCTTCTTTGAAGGTCTGATAGAACTCTGCATTAAACC
CATCTGGTCCTGGGCTTTTTTTTGGCTGGGAGACTATTAATGACTTCTAT
TTCTTTAGGGGATATAGGACTGTTGATATCATTAACCTAATCTTGATTTA
GCTTTGGTACCTGGTATCTGTCTAGAAACTTGTCAATTTCATCN

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGCAGCCAAGAAAATTTCTGAGAAAATA
ATTAACAAGAACATGAAAAATTACTGTAAATCTGTAATATGTTAATTACT
TAAAATATATTTTGAAGAAAAAAAATCACTGTTCCAAAGCTGAAAAGTCA
CCATGTATAAAGATAAAACAGAAGCGTTGGCTTTAGAAAGAGATGTTACC
AAAACAAGAGAGTTGCTAAATTTGACAAGAAGTAAACTGCGAACACAAAA
AATTTAGACTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAG
GAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGT
AGATGACCACATTTTCTGTATCCATTCCTCTGTTGAGGGCATCTGGGTTC
TTTCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCA
TGTGTCCTTTCTTACAGNNTGGACATCTTCTNGATATATGCCCAGGAGAG
GTATTGCTGGATCCCTCAGTCGACTATGTCCATTTTCTGAAGACCCGCNG
ACGAATTCAAAATTGTTGTCAAACCTGCATCCCACCAAAATGGAAGAAGG
TTCTCTTTTCCATTCCCCCAGAATTTTGACCTGATTTTGACTTACCATTC
GACGGGGAAAGGAACCCCGGTGTTTTATTGCTTTCCGGAAAAAAGGGAAA
ATTTTCGGGTTCCCCCTGGATTCCGGGAAAATTTGGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_j19.g1 MSMg01no547_j19.g1 CHROMAT_FILE:
MSMg01no547_j19.g1 PHD_FILE: MSMg01no547_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:17 2005
         (392 letters)



>mm_chr1_111627031_111627821
          Length = 791

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%), Gaps = 1/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcagccaagaaaatttctgagaaaataattaacaagaacatgaaaaattactgtaaa 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgcagccaagaaaatttctgataaaataattaacaagaacatgaaaaattactgtaaa 260

                                                                       
Query: 61  tctgtaatatgttaattacttaaaatatattttgaagaaaaaaaatcactgttccaaagc 120
           ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 261 tctgtaatatgttaattacttaaaatatattttaaagaaaaaaa-tcactgttccaaagc 319

                                                                       
Query: 121 tgaaaagtcaccatgtataaagataaaacagaagcgttggctttagaaagagatgttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgaaaagtcaccatgtataaagataaaacagaagcgttggctttagaaagagatgttacc 379

                                                                       
Query: 181 aaaacaagagagttgctaaatttgacaagaagtaaactgcgaacacaaaaaatttagact 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 380 aaaacaagagagttgctaaatttgacaagaagtaaactgcgtacacaaaaaatttagact 439

             
Query: 241 ca 242
           ||
Sbjct: 440 ca 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 791
Length adjustment: 9
Effective length of query: 383
Effective length of database: 782
Effective search space:   299506
Effective search space used:   299506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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