Query= MSMg01no547_k24.b1 MSMg01no547_k24.b1 CHROMAT_FILE:
MSMg01no547_k24.b1 PHD_FILE: MSMg01no547_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:23 2005
(448 letters)
>mm_chr1_149739371_149740218
Length = 848
Score = 785 bits (406), Expect = 0.0
Identities = 437/454 (96%), Gaps = 13/454 (2%)
Strand = Plus / Minus
Query: 5 gaattcataacaactatatctgtggaacgaatattgatgaactttataaccaaagcctca 64
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gaattcataacaacta-aaatgtggaacgaatattgatgaactttataaccaaagcctca 599
Query: 65 tattaagtgaaaatgatagctacatggggttggtacagataatttcatatggtgtgtgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tattaagtgaaaatgatagctacatggggttggtacagataatttcatatggtgtgtgtg 539
Query: 125 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg----------tgctgatgca 174
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 538 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtatgctgatgca 479
Query: 175 aatcattggtagcagaagagatgtaaaatcaaatctgatcacattgagatccctggtcat 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aatcattggtagcagaagagatgtaaaatcaaatctgatcacattgagatccctggtcat 419
Query: 235 gcttatgagctacaagatcttacaatgggtaaggctagagagaagaaagactttatcttc 294
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 418 gcttatgagctacaagatcttacaatgggtaaggctagagagaagaaagac--tatcttc 361
Query: 295 gagacagggtctcattatttagcccagtctacactcaaatgctctgcagttcttctgcat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gagacagggtctcattatttagcccagtctacactcaaatgctctgcagttcttctgcat 301
Query: 355 taggttctcaagttctggaattacaaatgtgtgctacaaccactgaaaaattgatgtact 414
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 taggctctcaagttctggaattacaaatgtgtgctacaaccactgaaaaattgatgtact 241
Query: 415 tcaataatatctgttgacaggttctacatttcaa 448
|||||||||||||||||||| |||||||||||||
Sbjct: 240 tcaataatatctgttgacagtttctacatttcaa 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_k24.g1 MSMg01no547_k24.g1 CHROMAT_FILE:
MSMg01no547_k24.g1 PHD_FILE: MSMg01no547_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:23 2005
(592 letters)
>mm_chr1_149897708_149898699
Length = 992
Score = 671 bits (347), Expect = 0.0
Identities = 380/391 (97%), Gaps = 3/391 (0%)
Strand = Plus / Minus
Query: 202 gttttttttgttttgttttgttttgttttttggggttttgggttttgttttgttttgttt 261
||||||||| |||| |||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct: 976 gtttttttt-tttt-ttttttttttttttttgggg-tttgggttttgttttgttttgttt 920
Query: 262 tttactcctattaatgtcagaagttacatccaaagagtctcaccaacatgatgtctaaac 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 tttactcctattaatgtcagaagttacatccaaagagtctcaccaacatgatgtctaaac 860
Query: 322 aggagctagcagaacaatcataggcaagttaaagtacagagggaaaagcccttgaagcat 381
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 859 aggagctagcagaacaatcataggcaagttaaagtacagagggaaaagtccttgaagcat 800
Query: 382 ccatcctgtagatgcgtttgtggttcctcatgtcataacatgaaagagaggaacacatat 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ccatcctgtagatgcgtttgtggttcctcatgtcataacatgaaagagaggaacacatat 740
Query: 442 tcattacaccatgagcccgtcattagtgtggaggccgcttaagagcaaggtcttgtcaga 501
|||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||| ||
Sbjct: 739 tcattacaccatgatcccatcatcagtgtggaggccacttaagagcaaggtcttgtctga 680
Query: 502 tcctctatatgcactccatctgtgtagtgaggagcgctcagaaatgaaaaagaatgaaaa 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcctctatatgcactccatctgtgtagtgaggagcgctcagaaatgaaaaagaatgaaaa 620
Query: 562 gtaatgaaaatttgtgctatccttaatgtag 592
|||||||||||||||||||||||||||||||
Sbjct: 619 gtaatgaaaatttgtgctatccttaatgtag 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
