BAC Information

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BAC

Clone NameMSMg01-547M05
Chromosome1 (Build37)
Map Location 49,413,633 - 49,557,828
singlet/doubletdoublet
Overlap geneLOC627430, LOC100041981
Upstream geneLOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik
Downstream geneEG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547M05.T7 (MSMg01no547_m05.b1)MSMg01-547M05.TJ (MSMg01no547_m05.g1)
ACCAG612271AG612272
length746757
length of high quality
(start - end)		714 (30 - 743)667 (62 - 728)
definitionCHROMAT_FILE: MSMg01no547_m05.b1 PHD_FILE: MSMg01no547_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:29 2005CHROMAT_FILE: MSMg01no547_m05.g1 PHD_FILE: MSMg01no547_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(49,413,633 - 49,414,340)(49,557,162 - 49,557,828)
sequence
GCCGCTAAACGACTCCTATAGGTCGAGGATCCGCGGAATTCTCTGGTGCA
AAGTCAGGGCAGTGAGTATGAGTCTTTGGAAGGAGGATGATTAGGACTAA
ATCTTCTATTAGCAGTGTTTGCCTCTCCTCCAAGCAAGGCTTTCTTACAG
GCTGGGAACGTCTTTATGACCTCAACTACAGAGGAGAAAGTCTTCACCCA
CAGCCTTCCTAATGGTTTTACTTAAGACCTCTTGTAATCCTGCTGTCTTC
TGGATGACAAGAACAATAGTTATTTCAGGGTATGTGCTTCTGTATCATTG
AGAATGAGCTAAACCACACAAACGGATGGTGCCAATGAAAAGAATTAATA
CTAGGTTCCAAAAAGAAGGCAATTGCCTCTCATCAATCATACTTATATAG
ATTCTGAGAGAATTGTTGCAAGTGATGTCAACCTGAGTAAAAGTTACTAC
TGGAAGCCACAGGTTCTCTATGTCACCACACATATTAGAACATGACTACC
CAAAAGGAGCATGGCACCAGAAAGAAAATGCTTCCTTGGCACATCATATC
ATACCAGTCTTTTCCCAATAGATCCCCAGAGAAGTCTGAAGACACAGCTG
ACCACTTCTCGGAACTGAATGCTGCCTTGTGCTCATTCAAAATACAATTA
CATGACAAGTCCATACTCCCAGACTCTCAGCAGAGAATTCCAAGTCTGGT
ACTCTCAGCACAGGCCAGATCCTCAACAATATCCATGGCTTGGAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTCACCCACAGCCAATTTCAGAGTGAGGGAAGGGTTATA
ATCTAAGCTTTGGCCAAGGGTGGGAGTGCAGGAATGGGGACCATAGCTTA
AATGGAGCATCATTCAAGACTTAAGAAAGCAGGGATGCAGCTAAAGAGCC
CAAAGCCCAGTAGTAGTTAGTCCCATGACTGATACCTGAAGCCTTCCATC
TATTTAAGGGCCACCACACAGCTGTAGCAGAGGGCAGGGAAGGCAAAGGC
AGGCCCAGGCCAAGTGCCAGTAGAAGGTGATTGTGTGATGTGTCTGTTCA
CTGTTGCTTATTGCTCCCAAAGAAAACTGATTTCAACACACCTTCTTGAT
CCCAAAGTTCAACCAGGCAGACAGCGGTTACAATAGACAGGTAATGTTAC
ATACCACAACTTAGGTATTTCAAATGGATGAGAAGTTAGTATCAGAGCAG
TGTCTCAGGATGAAGTCTGAGAGGAGTTTCCCCTCCAGAACTTTGAGGTC
TACAGATGTGTCTGTAAGGCAAAAGACACCATCGATAAGACAAAAAGGCC
ACCAACAGATTGGGAAAAGATCTTTACCTATCCTAAATCAGATAGAGGAC
TAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATTA
AATAACCCCATTAAAAAATGGGGCTCAGACCTAAACAAAGAATTCTCACC
TGANGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_m05.b1 MSMg01no547_m05.b1 CHROMAT_FILE:
MSMg01no547_m05.b1 PHD_FILE: MSMg01no547_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:29 2005
         (714 letters)



>mm_chr1_49413427_49414540
          Length = 1114

 Score = 1369 bits (708), Expect = 0.0
 Identities = 708/708 (100%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctctggtgcaaagtcagggcagtgagtatgagtctttggaaggaggatgattagg 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctctggtgcaaagtcagggcagtgagtatgagtctttggaaggaggatgattagg 266

                                                                       
Query: 67  actaaatcttctattagcagtgtttgcctctcctccaagcaaggctttcttacaggctgg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 actaaatcttctattagcagtgtttgcctctcctccaagcaaggctttcttacaggctgg 326

                                                                       
Query: 127 gaacgtctttatgacctcaactacagaggagaaagtcttcacccacagccttcctaatgg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gaacgtctttatgacctcaactacagaggagaaagtcttcacccacagccttcctaatgg 386

                                                                       
Query: 187 ttttacttaagacctcttgtaatcctgctgtcttctggatgacaagaacaatagttattt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttttacttaagacctcttgtaatcctgctgtcttctggatgacaagaacaatagttattt 446

                                                                       
Query: 247 cagggtatgtgcttctgtatcattgagaatgagctaaaccacacaaacggatggtgccaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cagggtatgtgcttctgtatcattgagaatgagctaaaccacacaaacggatggtgccaa 506

                                                                       
Query: 307 tgaaaagaattaatactaggttccaaaaagaaggcaattgcctctcatcaatcatactta 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgaaaagaattaatactaggttccaaaaagaaggcaattgcctctcatcaatcatactta 566

                                                                       
Query: 367 tatagattctgagagaattgttgcaagtgatgtcaacctgagtaaaagttactactggaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tatagattctgagagaattgttgcaagtgatgtcaacctgagtaaaagttactactggaa 626

                                                                       
Query: 427 gccacaggttctctatgtcaccacacatattagaacatgactacccaaaaggagcatggc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gccacaggttctctatgtcaccacacatattagaacatgactacccaaaaggagcatggc 686

                                                                       
Query: 487 accagaaagaaaatgcttccttggcacatcatatcataccagtcttttcccaatagatcc 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 accagaaagaaaatgcttccttggcacatcatatcataccagtcttttcccaatagatcc 746

                                                                       
Query: 547 ccagagaagtctgaagacacagctgaccacttctcggaactgaatgctgccttgtgctca 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ccagagaagtctgaagacacagctgaccacttctcggaactgaatgctgccttgtgctca 806

                                                                       
Query: 607 ttcaaaatacaattacatgacaagtccatactcccagactctcagcagagaattccaagt 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ttcaaaatacaattacatgacaagtccatactcccagactctcagcagagaattccaagt 866

                                                           
Query: 667 ctggtactctcagcacaggccagatcctcaacaatatccatggcttgg 714
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ctggtactctcagcacaggccagatcctcaacaatatccatggcttgg 914


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space:   777216
Effective search space used:   777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no547_m05.g1 MSMg01no547_m05.g1 CHROMAT_FILE:
MSMg01no547_m05.g1 PHD_FILE: MSMg01no547_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:29 2005
         (667 letters)



>mm_chr1_49557133_49558199
          Length = 1067

 Score = 1282 bits (663), Expect = 0.0
 Identities = 666/667 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcacccacagccaatttcagagtgagggaagggttataatctaagctttggccaagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ctcacccacagccaatttcagagtgagggaagggttataatctaagctttggccaagggt 637

                                                                       
Query: 61  gggagtgcaggaatggggaccatagcttaaatggagcatcattcaagacttaagaaagca 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gggagtgcaggaatgggggccatagcttaaatggagcatcattcaagacttaagaaagca 577

                                                                       
Query: 121 gggatgcagctaaagagcccaaagcccagtagtagttagtcccatgactgatacctgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gggatgcagctaaagagcccaaagcccagtagtagttagtcccatgactgatacctgaag 517

                                                                       
Query: 181 ccttccatctatttaagggccaccacacagctgtagcagagggcagggaaggcaaaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ccttccatctatttaagggccaccacacagctgtagcagagggcagggaaggcaaaggca 457

                                                                       
Query: 241 ggcccaggccaagtgccagtagaaggtgattgtgtgatgtgtctgttcactgttgcttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggcccaggccaagtgccagtagaaggtgattgtgtgatgtgtctgttcactgttgcttat 397

                                                                       
Query: 301 tgctcccaaagaaaactgatttcaacacaccttcttgatcccaaagttcaaccaggcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgctcccaaagaaaactgatttcaacacaccttcttgatcccaaagttcaaccaggcaga 337

                                                                       
Query: 361 cagcggttacaatagacaggtaatgttacataccacaacttaggtatttcaaatggatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cagcggttacaatagacaggtaatgttacataccacaacttaggtatttcaaatggatga 277

                                                                       
Query: 421 gaagttagtatcagagcagtgtctcaggatgaagtctgagaggagtttcccctccagaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gaagttagtatcagagcagtgtctcaggatgaagtctgagaggagtttcccctccagaac 217

                                                                       
Query: 481 tttgaggtctacagatgtgtctgtaaggcaaaagacaccatcgataagacaaaaaggcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tttgaggtctacagatgtgtctgtaaggcaaaagacaccatcgataagacaaaaaggcca 157

                                                                       
Query: 541 ccaacagattgggaaaagatctttacctatcctaaatcagatagaggactaatatccaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ccaacagattgggaaaagatctttacctatcctaaatcagatagaggactaatatccaat 97

                                                                       
Query: 601 atatataaagaactcaagaaggtggactccagaaaattaaataaccccattaaaaaatgg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  atatataaagaactcaagaaggtggactccagaaaattaaataaccccattaaaaaatgg 37

                  
Query: 661 ggctcag 667
           |||||||
Sbjct: 36  ggctcag 30


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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