Query= MSMg01no547_m07.b1 MSMg01no547_m07.b1 CHROMAT_FILE:
MSMg01no547_m07.b1 PHD_FILE: MSMg01no547_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:29 2005
(647 letters)
>mm_chr1_11174341_11175387
Length = 1047
Score = 1183 bits (612), Expect = 0.0
Identities = 636/644 (98%)
Strand = Plus / Plus
Query: 4 ggaattccattgcctccttcacgagtatctgcagcagccagtgcagttcctacttccaca 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccattgcttccttcacgagtatctgcagcagccagtgcagttcctacttccaca 263
Query: 64 gtgatgagatggactcaggtgcgtgtggtagacatctgcactcttcaatatttgtaatgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgatgagatggactcaggtgcgtgtggtagacatctgcactcttcaatatttgtaatgt 323
Query: 124 ccaagaagcctgtaagagggggattgatgtttgaatccacatgcattttcaattttatga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaagaagcctgtaagagggggattgatgtttgaatccacatgcattttcaattttatga 383
Query: 184 gtcattctccatggccacccattattgccttgtgatcaataaagtgagtttccaaatctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtcattctccatggccacccattattgccttgtgatcaataaagtgagtttccaaatctc 443
Query: 244 agctttaaaaacagtacatttaaaagtgtcatttgacttatagcctcttatcttcctgtt 303
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 444 agttttaaaaacagtacatttaaaagtgttatttgacttatagcctcttatcttcctgtt 503
Query: 304 cattgtgaaaggttctaggtacactggaaccagaaacattgggcatggatgcttgggagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cattgtgaaaggttctaggtacactggaaccagaaacattgggcatggatgcttgggagg 563
Query: 364 agataagagaggacatttcagcctgaggatgttttttagaaggcacagacccctgagaac 423
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agataggagaggacatttcagcctgaggatgttttttagaaggcacagacccctgagaac 623
Query: 424 cttatatttagttaacagggagaaggccattagaaaacacaggttgatgctttatactct 483
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 cttatatttagttaacagggagaaggtgattagaaaacacaggttgatgctttatactct 683
Query: 484 ctgtgatgcacattgctttggttactttaggaccataatccaactgactcttctgctctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctgtgatgcacattgctttggttactttaggaccataatccaactgactcttctgctctg 743
Query: 544 agacctgataccatcttttttctaatgtgagataagagctcattttgaattacttgaatg 603
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agacctgataccatcttttttgtaatgtgagataagagctcattttgaattacttgaatg 803
Query: 604 ttatcaaatatgatagtagttccatgtgctaaaaaatgggatga 647
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 804 ttatcaaatatgagagtagttccatgtgctaaaaaatgggatga 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_m07.g1 MSMg01no547_m07.g1 CHROMAT_FILE:
MSMg01no547_m07.g1 PHD_FILE: MSMg01no547_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:29 2005
(677 letters)
>mm_chr1_11221708_11222788
Length = 1081
Score = 944 bits (488), Expect = 0.0
Identities = 584/630 (92%), Gaps = 28/630 (4%)
Strand = Plus / Minus
Query: 73 catcttagtgagtcaaggattcctcccatctccttagcgtatattcagttgaggtgtcct 132
||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1068 catctcagtgaggcaaggattcctcccatctccttagcatatattcagttgaggtgtcct 1009
Query: 133 cctggtcaggtgattgacagccctagctgcatgggacagtcctatgtgatgctctaatca 192
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1008 cctggtcaggtgactgacagccctagctgcaggggacagtcctatgtgatgctctaatca 949
Query: 193 taggggagatgagaaggtcaactctctactcaggactcagattccattc----------- 241
|||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 948 taggggagatgagaaggtgaa--ctctactcaggactcagattccattcttttttttttt 891
Query: 242 ---------tttttttttttcagcaggaagtagctttcccttaaagagactccaaaaatc 292
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ttttttttttttttttttttcagcaggaagtagctttcccttaaagagactccaaaaatc 831
Query: 293 cctgatacttctacttttccatatattattttaaatcttaaaaagagggaagctgacatt 352
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 830 cctgatacctctacttttccatatattattttaaatcttagaaagagggaagctgacatt 771
Query: 353 tcctttcattgtattaccagagaaataagttagctctaaagttaaccatggtgaaagagt 412
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 770 tcctttcattgtattaccagagaaataagttagctctaaagttaaccatgatgaaagagt 711
Query: 413 ctatcttccatggcttccaagtctgctaatatctggaataactgcacagtaactgt--gt 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 710 ctatcttccatggcttccaagtctgctaatatctggaataactgcacagtaactgtgcgt 651
Query: 471 aggaagaaagggagaattaaattcaaatatcatttacttggatgcaaatata-ttttttc 529
|||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct: 650 aggaagaaagggagaattaacttcaaatatcatttacttggatgcaaatacatttttttc 591
Query: 530 caataccaagtacatggctgtcatgtcttcatatggagcc-ttttttctctgcc-tgtga 587
|||||||||| ||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct: 590 caataccaagcacatggctgtcatgtcttcatatggagcctttttttctct-ccatgtga 532
Query: 588 ggagctacatatttaccagtacaggaagtattgtactttccttgcagttcaatgaccctt 647
||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 531 ggagctagacgtttaccagtacaggaagtaatgtactttccttgcagttcactgaccctt 472
Query: 648 gctgtagctggcactataacatacaacaat 677
||||||||||||||||||| ||||||||||
Sbjct: 471 gctgtagctggcactataagatacaacaat 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1081
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1071
Effective search space: 714357
Effective search space used: 714357
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
