BAC Information

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BAC

Clone NameMSMg01-547N21
Chromosome1 (Build37)
Map Location 62,412,335 - 62,412,972
singlet/doubletsinglet
Overlap genePard3b
Upstream genenone
Downstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547N21.T7 (MSMg01no547_n21.b1)MSMg01-547N21.TJ (MSMg01no547_n21.g1)
ACCAG612351AG612352
length731738
length of high quality
(start - end)
696 (36 - 731)642 (67 - 708)
definitionCHROMAT_FILE: MSMg01no547_n21.b1 PHD_FILE: MSMg01no547_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:37 2005CHROMAT_FILE: MSMg01no547_n21.g1 PHD_FILE: MSMg01no547_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCCTG
ATCTTTCCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTT
TTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTT
ATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCAT
CCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTTCTTTAATGTGTT
CTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATCAATATTC
ATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGG
TTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTAC
CTTCTACTTCTATCTTGTGAAATAGTTTGTGCAGAACTGGAATTAGATCT
TCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTGGGCT
TTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGGGATA
TGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACTTTGGTACCTGG
TATCTGTCCAGAAATTTGTCCATTTTGTCCAGGTTTTCCAGTTTTGTTGA
GTATAAGCTTTTGTAGAAGGATCTGATAGTGTTTTGGATTTCTTCAAGAT
CTGTTGTTATGTCTCCCTTTTCATTTCTGAT
GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTCCCCTAACTGAACTACCTGGTTGGGCCTCA
GTGGAAGAGGATGTATTTAGGTCTACTGTGACTGGAAGTCCCAGGGTGAG
GTGGTACCAAAGCAGAGCTTCCCTTTCTCTGAGCAGAAGGGGAGGAAATA
ATGGCAGGAGGCATTTGTAATGGAGGGACTAGGAAAAGAGGAGAGATGGG
GAGCTGCAATTGGGATGTAAAGTGAATTAATTAATTAATTAATTAATTAA
TAAAAAACCCTAAGTACTGTAGAAGACTAAGCCTAAACTATTGTCTATAA
CATCAAAATTATACAGGCAAATCCTACATATTTTATATAACCACTTCTTT
GGTGATTGGGGGTGTCATAACCAGTCTTTATATGTTATGCAATTGCTCTT
TCATTGAGTGTTATATACCTGTCACTGAGTTTATTGAAACAGTGTCTTTC
TATGTAGTCCAGGCTGGCTTGACACTACCTCCCTGCATCCACCTTCTGAG
GGTTGGGATTATAGGCAGCTCCTGCCACACTTGGCAGCATAGACACTTTA
TTTTAGGCACTTGCGTGTTAAAGATTTTTAAGTGTATAGAAATGTTACAT
TTAATAGAATAATTTAATGTATAGATCTATAAGTCCCAAACAAAATATTT
TTTTCCAGTTGGTAACATGAAATACAATATAGTATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_n21.g1 MSMg01no547_n21.g1 CHROMAT_FILE:
MSMg01no547_n21.g1 PHD_FILE: MSMg01no547_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:37 2005
         (642 letters)



>mm_chr1_62412129_62413170
          Length = 1042

 Score = 1191 bits (616), Expect = 0.0
 Identities = 634/642 (98%), Gaps = 4/642 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttcccctaactgaactacctggttgggcctcagtggaagaggatgtatttaggtctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ccttcccctaactgaactacctggttgggcctcagtggaagaggatgtatttaggtctac 785

                                                                       
Query: 61  tgtgactggaagtcccagggtgaggtggtaccaaagcagagcttccctttctctgagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tgtgactggaagtcccagggtgaggtggtaccaaagcagagcttccctttctctgagcag 725

                                                                       
Query: 121 aaggggaggaaataatggcaggaggcatttgtaatggagggactaggaaaagaggagaga 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 724 aaggggaggaaataatggcaggaggaatttgtaatggagggactaggaagagaggagaga 665

                                                                       
Query: 181 tggggagctgcaattgggatgtaaagtgaattaattaattaattaattaattaataaaaa 240
           ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 664 tggggagctgcaattgggatgtaaagtg----aattaattaattaattaattaataaaaa 609

                                                                       
Query: 241 accctaagtactgtagaagactaagcctaaactattgtctataacatcaaaattatacag 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 accctaagtactctagaagactaagcctaaactattgtctataacatcaaaattatacag 549

                                                                       
Query: 301 gcaaatcctacatattttatataaccacttctttggtgattgggggtgtcataaccagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gcaaatcctacatattttatataaccacttctttggtgattgggggtgtcataaccagtc 489

                                                                       
Query: 361 tttatatgttatgcaattgctctttcattgagtgttatatacctgtcactgagtttattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tttatatgttatgcaattgctctttcattgagtgttatatacctgtcactgagtttattg 429

                                                                       
Query: 421 aaacagtgtctttctatgtagtccaggctggcttgacactacctccctgcatccaccttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaacagtgtctttctatgtagtccaggctggcttgacactacctccctgcatccaccttc 369

                                                                       
Query: 481 tgagggttgggattataggcagctcctgccacacttggcagcatagacactttattttag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgagggttgggattataggcagctcctgccacacttggcagcatagacactttattttag 309

                                                                       
Query: 541 gcacttgcgtgttaaagatttttaagtgtatagaaatgttacatttaatagaataattta 600
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcacttgcatgttaaagatttttaagtgtatagaaatgttacatttaatagaataattta 249

                                                     
Query: 601 atgtatagatctataagtcccaaacaaaatatttttttccag 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 atgtatagatctataagtcccaaacaaaatatttttttccag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)