Query= MSMg01no548_a19.b1 MSMg01no548_a19.b1 CHROMAT_FILE:
MSMg01no548_a19.b1 PHD_FILE: MSMg01no548_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:52 2005
(548 letters)
>mm_chr1_17519156_17520107
Length = 952
Score = 774 bits (400), Expect = 0.0
Identities = 512/552 (92%), Gaps = 12/552 (2%)
Strand = Plus / Minus
Query: 4 ggaattccagagtcaggaaatgggagtctgtgtgttgggcagcagggtgtggggagtgaa 63
|||||| ||| || ||||| ||||||||||||||||||||||||||| || ||| || |
Sbjct: 883 ggaatttcagggtgaggaattgggagtctgtgtgttgggcagcagggcgtacggaatgta 824
Query: 64 tgggggctttggtg-atagcatttgaaatgtaaatgaagaaattatctaataaaatatta 122
| ||||||||| | ||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 823 tcagggctttgg-gaataacatttgaaatgcaaatgaagaaaatatctaataaaatatta 765
Query: 123 tacttgaaaaaaaattcagtgaaatgcaaatagaacaaatgttttagaacttgtctctga 182
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 764 tacttg--aaaaaattcagtgaaatgaaaatagaacaaatgttttagaacttgtctctga 707
Query: 183 gattgaatttgaagtacaaaggaggcaacta-tatgagaataggacctcagaatggt-ga 240
||||||||||||||||||||||||||||| | | |||||||||||||||||||| | |
Sbjct: 706 gattgaatttgaagtacaaaggaggcaac-accacgagaataggacctcagaatgctag- 649
Query: 241 tcctgaagtcttttagctctggatagggcacacctgtgttgactcccaaactgatgtgct 300
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 648 tcctgaagtctgttagctctggatagggcacacctctgttgactcccaaactgatgtgct 589
Query: 301 acactcattctcctttctttctggagaatccttacatgtctcattctcaccattcaacat 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 588 acactcattctcctttctttctggagaatccttacgtgtctcattctcaccattcaatat 529
Query: 361 gaacttcatttcacatcctctccaaactcttcagatgagtttaattctcctaattttatt 420
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||
Sbjct: 528 gaacttcatttcacatcctctcccaactcttcagatgagtttagttctcctaattttgtt 469
Query: 421 ccccattatttaactaactttccaatgattgcaccttcttagtgactgctatttgtttga 480
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ccccattatttaaatgactttccaatgattgcaccttcttagtgactgctatttgtttga 409
Query: 481 tataagaaagaatgttatgacataatgtttcatgatacag----tgttacaaaatcaaaa 536
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 408 tataagaaagaatgttatgacataatgtttcatgatacagtacctgttacaaaagcaaaa 349
Query: 537 tattgacaaagg 548
||||||||||||
Sbjct: 348 tattgacaaagg 337
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 952
Length adjustment: 10
Effective length of query: 538
Effective length of database: 942
Effective search space: 506796
Effective search space used: 506796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_a19.g1 MSMg01no548_a19.g1 CHROMAT_FILE:
MSMg01no548_a19.g1 PHD_FILE: MSMg01no548_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:52 2005
(517 letters)
>mm_chr1_17648415_17649331
Length = 917
Score = 824 bits (426), Expect = 0.0
Identities = 450/466 (96%), Gaps = 13/466 (2%)
Strand = Plus / Minus
Query: 1 ctggggcaaggatttgataataaataaacggaatccattgtgtggcctccagcaaaatat 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 453 ctggggcaaggatttgataataaataaacagaatccattgtgtggcctccagcaaaatat 394
Query: 61 gtcaccaaaggtctaaattcattctttatgaaagagataatatatttccagagttgttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtcaccaaaggtctaaattcattctttatgaaagagataatatatttccagagttgttat 334
Query: 121 aggcaggacagggaggaaaatagccttctaactgactttattgtcatatatatagttggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aggcaggacagggaggaaaatagccttctaactgactttattgtcatatatatagttggc 274
Query: 181 aaggaaaaactgagataattttccaagagtgaaacaaagagaaagctaattttctcagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aaggaaaaactgagataattttccaagagtgaaacaaagagaaagctaattttctcagta 214
Query: 241 taacacacattgcttcttcagactgaggttcaagatcaagaatccagaagattcgatatg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 213 taacacacattgcttcttcagactgaggttcaagatcaagaatccagaagattcaatatg 154
Query: 301 taaagactctctgttcatcatagggatacctttactgtgttcttacatggtgaaagagca 360
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 t-------------tcatcatagggatacctttactgtgttcttacatggtgaaagagca 107
Query: 361 acccagctcctctggacttcttttatgagggtcctaatccactcatgatgcctccaccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 acccagctcctctggacttcttttatgagggtcctaatccactcatgatgcctccaccca 47
Query: 421 gttgctatcatttcctaagtctccgcctctgaatgtcattgcactg 466
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 46 gttgctatcatttcctaaggctccgcctctgaatgtcattgcactg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
