BAC Information

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BAC

Clone NameMSMg01-548B22
Chromosome1 (Build37)
Map Location 63,004,177 - 63,163,807
singlet/doubletdoublet
Overlap geneA430093A21Rik
Upstream genePard3b, LOC667592, Nrp2, LOC100043070
Downstream geneNdufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548B22.T7 (MSMg01no548_b22.b1)MSMg01-548B22.TJ (MSMg01no548_b22.g1)
ACCAG612544AG612545
length735740
length of high quality
(start - end)		674 (46 - 719)590 (74 - 663)
definitionCHROMAT_FILE: MSMg01no548_b22.b1 PHD_FILE: MSMg01no548_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:57 2005CHROMAT_FILE: MSMg01no548_b22.g1 PHD_FILE: MSMg01no548_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,004,177 - 63,004,846)(63,163,242 - 63,163,807)
sequence
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTAAGATTTAAGTGTGTAAATAATGTCCCCAGCACACCTGGGG
ACAGCCCTCAGCAACACGACAAGTTCACAAAAGCATACACATTCATTTCC
TTTATCCACTGGAACAAGTCACCATAGTCATGATGTTTAAAAACAAAACA
GCATATGATCATACAGTTCTGGAGGTCAGAAGTCTGAAATGGGTCTCCCT
GGGCTCTGGTGAGGTTATCTATAGGGCCTCATTTTTTTCAATAAGAGAAT
CAATTTCTTTTCCTTTCCCAGATTCCAGACATGGTCCACGGTCCCTGTTC
ATCCACCATCCACCCTCTCCAGAGTCAGTAGTGGAATACCTTGAAATCCT
TAACTCCAGCATCCCTCTAGGCCTGTGTACAGGACTCTGTTGTTTAGCTG
GGCCCAGCTAGATAATCCAGGAAGCCATCACTATTTCCAGGATATCTAGT
TAGGACCTTAACTCTGTCTGTAACCTCACGTCCACACTGTTCTATAACAT
AAACGGTCATGGGTTCCAGGGAATGGTGCATGGGCATCTTTAGAGATGCC
AATCTTCTTCCAACCAGTGGGTCTTCACTGACCCCTTCTCTACTTCATTG
CCTCCTCTTTCACTCTTCCTGCACTCAAGGGTACACAGGTCGGCAGAAGC
TATTTACCTGATGTCATTGGAGATGGTGAGCTACT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGCCATCCTGGTCTACACAGTGAGT
TCCAGACCAGCCAGGGCTACTACATAGTAGGACTGACTCAAGCCAAACCA
AACAGAAGAGAGAATAAAATAACACATACATTAAAGTGTCTAGCTGATCA
GTGGGCAGCACTCGCCTTTAAGAAGTCCAGGACCTGGAAGGCAGAGATTA
AGATGGAGCTCTGAGTTCGAGGCCAACCTGGTCTACAGTCTACAGTGCCA
GGACAGCCAGGGCTACACAGAGAAACCTTGTCTCATCCCCTACACTCCCC
TCAAAACCCTAAAAAGTATTAACTTTAATGAAATGCAGCTTCAGCTTGTG
AAGGGAGGCGATCACCGGCTATATAAAGGAAGGCACACACGAGGAGAGAC
ATGGGGCCACACACATGCTTCTCAGGTCCACTGCGACCTGCAATGGACGC
TTACTCTCTTGTATGACCACTGTGCTTTATGTCCAAGGGGGACAGAACAA
ATACTGGGCTGAGTGGGTGATGTGACTAATACTGGCACAAAAAGCTATGA
GTTCCATGCTAGCCTGAACTACCTACTGAGTCCAGGGCCAGCTTGGGTTA
GATAGCAAGATCCTTTCAACAAATCAAACCAAACCAAACCATCAACAAAA
ATGTAAATATCTGGNGGCGGGGGAGGGTGTGGGGGACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_b22.b1 MSMg01no548_b22.b1 CHROMAT_FILE:
MSMg01no548_b22.b1 PHD_FILE: MSMg01no548_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:57 2005
         (674 letters)



>mm_chr1_63003973_63005046
          Length = 1074

 Score = 1226 bits (634), Expect = 0.0
 Identities = 661/670 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttaagatttaagtgtgtaaataatgtccccagcacacctggggacagccctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttaagatttaagtgtgtaaataatgtccccagcacacctggggacagccctc 264

                                                                       
Query: 65  agcaacacgacaagttcacaaaagcatacacattcatttcctttatccactggaacaagt 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcaacacgacaagttcacaaaagcatacacattcatttcctttatccactggaacaagt 324

                                                                       
Query: 125 caccatagtcatgatgtttaaaaacaaaacagcatatgatcatacagttctggaggtcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caccatagtcatgatgtttaaaaacaaaacagcatatgatcatacagttctggaggtcag 384

                                                                       
Query: 185 aagtctgaaatgggtctccctgggctctggtgaggttatctatagggcctcatttttttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtctgaaatgggtctccctgggctctggtgaggttatctatagggcctcatttttttc 444

                                                                       
Query: 245 aataagagaatcaatttcttttcctttcccagattccagacatggtccacggtccctgtt 304
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aataagagaatccattccttttcctttcccagattccagacatggtccacggtccctgtt 504

                                                                       
Query: 305 catccaccatccaccctctccagagtcagtagtggaataccttgaaatccttaactccag 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 catccaccatccaccctctccagagtcagtagtggaataccttgaaatcctttactccag 564

                                                                       
Query: 365 catccctctaggcctgtgtacaggactctgttgtttagctgggcccagctagataatcca 424
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catccctctaggcccgtgtacaggactctgttgtttagctgggcccagctagataatcca 624

                                                                       
Query: 425 ggaagccatcactatttccaggatatctagttaggaccttaactctgtctgtaacctcac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaagccatcactatttccaggatatctagttaggaccttaactctgtctgtaacctcac 684

                                                                       
Query: 485 gtccacactgttctataacataaacggtcatgggttccagggaatggtgcatgggcatct 544
           |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 685 gtccacactgctctataacataaacggtcatggattccagggaatggtgcatgggtatct 744

                                                                       
Query: 545 ttagagatgccaatcttcttccaaccagtgggtcttcactgaccccttctctacttcatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 745 ttagagatgccaatcttcttccaaccagtgggtcttcactgaccccttctctactccatt 804

                                                                       
Query: 605 gcctcctctttcactcttcctgcactcaagggtacacaggtcggcagaagctatttacct 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gcctcctctttcactcttcctgcactcaagggtacacaggtcggcagaagctatttacct 864

                     
Query: 665 gatgtcattg 674
           ||||||||||
Sbjct: 865 gatgtcattg 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no548_b22.g1 MSMg01no548_b22.g1 CHROMAT_FILE:
MSMg01no548_b22.g1 PHD_FILE: MSMg01no548_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:57 2005
         (590 letters)



>mm_chr1_63162818_63163807
          Length = 990

 Score = 1079 bits (558), Expect = 0.0
 Identities = 564/566 (99%)
 Strand = Plus / Minus

                                                                       
Query: 25  agttccagaccagccagggctactacatagtaggactgactcaagccaaaccaaacagaa 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 agttccagaccagccagggctactacatagtaggactgactcaagccaaaccaaacagaa 931

                                                                       
Query: 85  gagagaataaaataacacatacattaaagtgtctagctgatcagtgggcagcactcgcct 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 gagagaataaaataacacatacattaaagtgtctagctgatcagtgggcagcactcgcct 871

                                                                       
Query: 145 ttaagaagtccaggacctggaaggcagagattaagatggagctctgagttcgaggccaac 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 ttaagaagtccaggacctggaaggcagagattaagatggagctctgagttcgaggccaac 811

                                                                       
Query: 205 ctggtctacagtctacagtgccaggacagccagggctacacagagaaaccttgtctcatc 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ctggtctacagtctacagtgccaggacagccagggctacacagagaaaccttgtctcatc 751

                                                                       
Query: 265 ccctacactcccctcaaaaccctaaaaagtattaactttaatgaaatgcagcttcagctt 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ccctacactcccctcaaaaccctaaaaagtattaactttaatgaaatgcagcttcagctt 691

                                                                       
Query: 325 gtgaagggaggcgatcaccggctatataaaggaaggcacacacgaggagagacatggggc 384
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gtaaagggaggcgatcaccggctatataaaggaaggcacacacgaggagagacatggggc 631

                                                                       
Query: 385 cacacacatgcttctcaggtccactgcgacctgcaatggacgcttactctcttgtatgac 444
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 630 cacacacatgcttctcaggtccactgcgacctgcaaaggacgcttactctcttgtatgac 571

                                                                       
Query: 445 cactgtgctttatgtccaagggggacagaacaaatactgggctgagtgggtgatgtgact 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cactgtgctttatgtccaagggggacagaacaaatactgggctgagtgggtgatgtgact 511

                                                                       
Query: 505 aatactggcacaaaaagctatgagttccatgctagcctgaactacctactgagtccaggg 564
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aatactggcacaaaaagctatgagttccatgctagcctgaactacctactgagtccaggg 451

                                     
Query: 565 ccagcttgggttagatagcaagatcc 590
           ||||||||||||||||||||||||||
Sbjct: 450 ccagcttgggttagatagcaagatcc 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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