BAC Information

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BAC

Clone NameMSMg01-548C12
Chromosome1 (Build37)
Map Location 165,540,247 - 165,540,657
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1
Downstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548C12.T7 (MSMg01no548_c12.b1)MSMg01-548C12.TJ (MSMg01no548_c12.g1)
ACCAG612572AG612573
length751746
length of high quality
(start - end)
360 (46 - 405)411 (77 - 487)
definitionCHROMAT_FILE: MSMg01no548_c12.b1 PHD_FILE: MSMg01no548_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:59 2005CHROMAT_FILE: MSMg01no548_c12.g1 PHD_FILE: MSMg01no548_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACAAGAATTAGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGCTCTGAGCCCCATCTTTTAAGGGGGTTATTTGATTT
TTCTGGAGTCAACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCC
CTATCTGATTTAAGGTAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCA
TGAGGTCCCATTTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTTTTCCCTGTGCCCATATCTTCGAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTATACAAGGAGATAAGTATGGATTTGCATTCT
TCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGT
CTTTCTTCCACTGAATGGCTTTAGCTCCCTTGTTGAAAATCAAGTGACCT
TAGGTGAGTGGGGTTTATTTTCTGGGGTCTTCATATTCCAATTCCATTTG
GGCCTACTTGTTTGGTCACCTATACCAGTTACCTAGGCTAGTTTTTTATA
ATCATTTGCTTCCGCTATTAAAGCCTTTAAGGCCATGATTGGTTGAATTT
CACCCTAAAAGGTACTTGTTATTCCTTGGAAAAATAAACTATTTAGCCTT
C
TACTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTAACCAAAAGACAAGTTTCT
TGCATCTGGGAAAAAGAGAGTTGGATCTATCTTTGTGTCATCTATCATAA
ATTGCCAGCTGAAGCCCGAGAGTTGAATATTTATTACAAGCAATGATGGA
AGAGGCAAGCGGAGCCCAGTTTTGATTTTCCAGATCTAAGACTGTATTTT
TGAACCAGAACGTAGAAGAATGCTTTGACTTAAGCTCTGAGCCAGCTTGA
TTTGGAACTGTCACCACCAAGAGAGAGCATGTCTGGAACACTGCAGTGTC
ATTTCTGGGTAGTCTGTCTTTTATGACTGGCTGTGAATTACCAAAGGGAG
ACAAGTGAATACTATGTCGGATGGAGAGGGGGTTACATGAAATCATTAGC
GCTGTCATAGCAAGCAGAAACAAGACCACCAGGCAGAACACAGGACCACC
CAACACAAAACATGAGCTCCCATTAGCAACATCGCAGAAACTGTATGCCC
TTGACATTTGCATTTCAGGATGTTGAGCCACCAAGCATGCTACAGGATAA
TTACTGCCTTTGGGATGACGGTTTAGCAACTCTTCACTGTGTGGAACCAC
CCAATTCTGGGTTTTGAATTTTGTTTCTTTTTTATTAAGCCACCATCTTG
AAAAACCGTCCTGTGTGTGGGAAGTCTTCCGGGTGAATTTCCCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_c12.g1 MSMg01no548_c12.g1 CHROMAT_FILE:
MSMg01no548_c12.g1 PHD_FILE: MSMg01no548_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:00 2005
         (411 letters)



>mm_chr1_165540047_165540857
          Length = 811

 Score =  787 bits (407), Expect = 0.0
 Identities = 410/411 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttaaccaaaagacaagtttcttgcatctgggaaaaagagagttggatctatctttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tttttaaccaaaagacaagtttcttgcatctgggaaaaagagagttggatctatctttgt 552

                                                                       
Query: 61  gtcatctatcataaattgccagctgaagcccgagagttgaatatttattacaagcaatga 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 551 gtcatctatcataaattgccagctgaagcccaagagttgaatatttattacaagcaatga 492

                                                                       
Query: 121 tggaagaggcaagcggagcccagttttgattttccagatctaagactgtatttttgaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tggaagaggcaagcggagcccagttttgattttccagatctaagactgtatttttgaacc 432

                                                                       
Query: 181 agaacgtagaagaatgctttgacttaagctctgagccagcttgatttggaactgtcacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agaacgtagaagaatgctttgacttaagctctgagccagcttgatttggaactgtcacca 372

                                                                       
Query: 241 ccaagagagagcatgtctggaacactgcagtgtcatttctgggtagtctgtcttttatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccaagagagagcatgtctggaacactgcagtgtcatttctgggtagtctgtcttttatga 312

                                                                       
Query: 301 ctggctgtgaattaccaaagggagacaagtgaatactatgtcggatggagagggggttac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctggctgtgaattaccaaagggagacaagtgaatactatgtcggatggagagggggttac 252

                                                              
Query: 361 atgaaatcattagcgctgtcatagcaagcagaaacaagaccaccaggcaga 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atgaaatcattagcgctgtcatagcaagcagaaacaagaccaccaggcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)