BAC Information

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BAC

Clone NameMSMg01-548G16
Chromosome1 (Build37)
Map Location 19,660,218 - 19,660,822
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548G16.T7 (MSMg01no548_g16.b1)MSMg01-548G16.TJ (MSMg01no548_g16.g1)
ACCAG612767AG612768
length721723
length of high quality
(start - end)
94 (229 - 322)648 (76 - 723)
definitionCHROMAT_FILE: MSMg01no548_g16.b1 PHD_FILE: MSMg01no548_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:20 2005CHROMAT_FILE: MSMg01no548_g16.g1 PHD_FILE: MSMg01no548_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAA
TTAAGGCCCATACCTAAACTAATAAAAGCAGTATATTGCCAACCAGTAGC
CAACACTAATCTAAATGAAGAGGATCTTGAAGCTATCCCACTAAAATCAG
GGACTAGACAAGACTACCCACTTTTCTCCCCATCTATTCAATATAGTACT
TGAAGTCCTAGCCAGAGCAATTAGACAACAAATTGGAGATCGAGGGGATA
CAAGTTGGAAAAGAAAAAGTAAAAATATCACTATTTGCAGATAATATGAT
AGTATATATAACTGACCTAAAAATTCCACCAGGGAACTCCTAAACCTGAT
AAACAGCTTTAGTTAAGTAGCTGGATACAAAATTAACTCAAACAAATCAG
TGGCATTTCTCTACACAAAGGATAAACAGGCTGAGAAAGAATTCATAGGA
TCAACACCCTTCACAATAGTCACAAATAATATAAAAAACCTTCGTGTGAC
TCTAACTAAGGAAGTGAAAGATCTATATGATAAGAACTACAAGTCTCTGA
AGAAAAATATCCAAGAAGCTCTCAAAAAATGAAAAGATCCCCATGCTCAT
GTATTGGCAGGATTTATATATGAAAAATGACCATCTTGCTAAAAGCAATC
TATAGATTCAATGCAATTTCCATTCAAATTTCAACCCAATTCTTCATCAT
GTCATAAAAGGAAATTTTGCA
AACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAATTGAGGAATACTGAATGGCTG
AGAAGCACCTGAAAAAAAAATGTTCAACATCCTTAATCATTAGGGAAATG
CAAATCAAGGAAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGCCGGTGGGATTGCAAGCTTGTACAGCCTATTATT
TTTAAATGAAGTTAATGGTACATTCCTATTCATTTTGTTGTAAACCTCCT
GTTAATTAATAATTTACCTATAAATTTGTCAGCAAATTAGAGGCAAAACA
ACTTGGGTTTGGCCAGAACATTGAAAATAATTGGAATGAGAATTTAGAGT
ATTTATCTTCAAATGCCAGGGATACATAAATGGAATATAATGACTAGGAC
TCCACACATTTTTTTTTCTATTTCTTAGGAGTTGTTCAACATAGAGATCC
ACTGATTGTCTTGACGCCATAACATAGCATACGATTGTGAATGAGAATCA
CTGTCTTTAACATCAAACTTTTCAAATAGCATTTTAATTTATCTTGAAGT
TGTGAACCAAAGTCATTCTCATTTTGTGTAATTTTACATCAGCTCCAAAG
GGTATAATTTCCAGGTTTTGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_g16.g1 MSMg01no548_g16.g1 CHROMAT_FILE:
MSMg01no548_g16.g1 PHD_FILE: MSMg01no548_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:20 2005
         (648 letters)



>mm_chr1_19659774_19660822
          Length = 1049

 Score = 1154 bits (597), Expect = 0.0
 Identities = 603/605 (99%), Gaps = 1/605 (0%)
 Strand = Plus / Minus

                                                                        
Query: 45   atgttcaacatccttaatcattagggaaatgcaaatcaaggaaaccctgagattccacct 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 atgttcaacatccttaatcattagggaaatgcaaatcaaggaaaccctgagattccacct 990

                                                                        
Query: 105  cacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatg 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989  cacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatg 930

                                                                        
Query: 165  tggagaaagaggaacactcctccattgccggtgggattgcaagcttgtacagcctattat 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929  tggagaaagaggaacactcctccattgccggtgggattgcaagcttgtacagcctattat 870

                                                                        
Query: 225  ttttaaatgaagttaatggtacattcctattcattttgttgtaaacctcctgttaattaa 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869  ttttaaatgaagttaatggtacattcctattcattttgttgtaaacctcctgttaattaa 810

                                                                        
Query: 285  taatttacctataaatttgtcagcaaattagaggcaaaacaacttgggtttggccagaac 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809  taatttacctataaatttgtcagcaaattagaggcaaaacaacttgggtttggccagaac 750

                                                                        
Query: 345  attgaaaataattggaatgagaatttagagtatttatcttcaaatgccagggatacataa 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749  attgaaaataattggaatgagaatttagagtatttatcttcaaatgccagggatacataa 690

                                                                        
Query: 405  atggaatataatgactaggactccacaca-tttttttttctatttcttaggagttgttca 463
            ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 689  atggaatataatgactaggactccacacattttttttttctatttctaaggagttgttca 630

                                                                        
Query: 464  acatagagatccactgattgtcttgacgccataacatagcatacgattgtgaatgagaat 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629  acatagagatccactgattgtcttgacgccataacatagcatacgattgtgaatgagaat 570

                                                                        
Query: 524  cactgtctttaacatcaaacttttcaaatagcattttaatttatcttgaagttgtgaacc 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569  cactgtctttaacatcaaacttttcaaatagcattttaatttatcttgaagttgtgaacc 510

                                                                        
Query: 584  aaagtcattctcattttgtgtaattttacatcagctccaaagggtataatttccaggttt 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509  aaagtcattctcattttgtgtaattttacatcagctccaaagggtataatttccaggttt 450

                 
Query: 644  tgtaa 648
            |||||
Sbjct: 449  tgtaa 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1049
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1039
Effective search space:   662882
Effective search space used:   662882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)