TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGTCAGGTATCAGAGAGAGCTACCTCATTTTTCCCTTTTTATTT
AGTATGTGAACCCAGATACTGCGATGCTGACATCTACATGAGTGGTTTTC
TTAAATCTTCAGTCAATCATCTCTGGAAGTATTCTAAAAAAACACACCAA
GTTTGTTTCACCGCCCCACTAAGTGTTTCTTTGTACAATCAAATGGATCA
AATGAGCTGTCACATACATCTTTCAACCTCTTTACATTTCACTGTTGCTT
TTTCTTCTCCATTTGAGGAGTTTAGTTAGACTTTAGTTTCATCCTTATTC
TTTCTTCAAATACATAAAGAGCTTCACTTCACTGTCCCTTTGGCCTTTTA
AAAATCTTCCCCAGACACCAAATAGCTTCTTTCATTCTTTACCCCAGTCT
TTCAATTTTTTTAATTATTCAGATTCTATATAAGTAATGACACATTTATT
TTGTAGGTAAGATCATTAGTGTTGTCTATTAAAAGCCTTCTTCCTCATAT
ATTTGAAGACATCACTATTGGCCAGTATTGAGTTCCCTTCTGTGACAATA
GCTGTATTACTTTCTCTGGGTCATCAAAGTGAATGAGCAATTGTCTCTTC
CTTCAAGTGCCTCACAATTTAGAACAATGATATTTGTAGGTTTGAGAAGG
AATCAGTATAACATTGTGAGGAACATTTGAACGTTGA

CCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGATATTTCCCACAGGTTT
TTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGTTTTTTTTGTTTGTTTGGG
TTTTTTTGTTTTTTTTTTGTTTTTTTTTTTTTGTTGTTTTTTTGGCTTTT
TGAGACAGGGTTTCTATGTAGCCCTGGCTGTCCTGGAATTCACTTTGTAG
ACCAGGCTGCCCTTGAACCCAGAAATCTGCCTGCCTCTGCCTCCCAAGTG
CTGGGACTAAAGGCGTGTACCACCACGCCTGGCAATTTCCCCAGTTTTTA
ATTGGGTTATTTGTTTCATGAAGGGCAGGGTTTTGAATTCTTTAAATGTT
TGGGATATTAGCTGCCTAATATCAGCTCTGTACTAGGTAAAACATTTTCT
TCATTCCATAGGCTGCCACTTAGTCTAGATGGTGGTGCATATTCATATAA
GAACCTTTTCAATTTCTTGAGGTCCCATTAATTATTATTCTTAATGCCTG
TGACATTGTTCTGATCTGAAACATGTTTTCTTTGTCAAGGAGCTCAAACC
CCATTTACCACTAATTTCCCCTATCTCTCCATTTTATGTTACCTGTGCCC
AAATACACCCATGGTTGCATTAAGAGGGAAGTATTTTCCTACCCCAGTTT
CATTGCCCCCTGGAACCTTCCCCCAAACCCCTTTGAATCCCTGTAATTTC
CCACCATGGTGGAAATATGTGTGCCCCTTTTGTTCCTTAAACACTAAATC
G

Query= MSMg01no548_g22.b1 MSMg01no548_g22.b1 CHROMAT_FILE:
MSMg01no548_g22.b1 PHD_FILE: MSMg01no548_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:21 2005
         (688 letters)



>mm_chr1_116346030_116347117
          Length = 1088

 Score = 1270 bits (657), Expect = 0.0
 Identities = 672/677 (99%)
 Strand = Plus / Minus

                                                                        
Query: 12   aagtcaggtatcagagagagctacctcatttttccctttttatttagtatgtgaacccag 71
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 aagtcaggtatcagagagagctacctcatttttccctttttatttagtatgtgaacccag 1029

                                                                        
Query: 72   atactgcgatgctgacatctacatgagtggttttcttaaatcttcagtcaatcatctctg 131
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1028 atactgcgatgctgacatctacatgagtggttatcttaaatcttcagtcaatcatctctg 969

                                                                        
Query: 132  gaagtattctaaaaaaacacaccaagtttgtttcaccgccccactaagtgtttctttgta 191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968  gaagtattctaaaaaaacacaccaagtttgtttcaccgccccactaagtgtttctttgta 909

                                                                        
Query: 192  caatcaaatggatcaaatgagctgtcacatacatctttcaacctctttacatttcactgt 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908  caatcaaatggatcaaatgagctgtcacatacatctttcaacctctttacatttcactgt 849

                                                                        
Query: 252  tgctttttcttctccatttgaggagtttagttagactttagtttcatccttattctttct 311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848  tgctttttcttctccatttgaggagtttagttagactttagtttcatccttattctttct 789

                                                                        
Query: 312  tcaaatacataaagagcttcacttcactgtccctttggccttttaaaaatcttccccaga 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788  tcaaatacataaagagcttcacttcactgtccctttggccttttaaaaatcttccccaga 729

                                                                        
Query: 372  caccaaatagcttctttcattctttaccccagtctttcaatttttttaattattcagatt 431
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 728  caccaaatagcttctttcattctttcccccagtctttcaatttttttaattattcagatt 669

                                                                        
Query: 432  ctatataagtaatgacacatttattttgtaggtaagatcattagtgttgtctattaaaag 491
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 668  ctatataagtaatgacacatttattttgtaagtaagatcattagtgttgtctattaaaag 609

                                                                        
Query: 492  ccttcttcctcatatatttgaagacatcactattggccagtattgagttcccttctgtga 551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608  ccttcttcctcatatatttgaagacatcactattggccagtattgagttcccttctgtga 549

                                                                        
Query: 552  caatagctgtattactttctctgggtcatcaaagtgaatgagcaattgtctcttccttca 611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548  caatagctgtattactttctctgggtcatcaaagtgaatgagcaattgtctcttccttca 489

                                                                        
Query: 612  agtgcctcacaatttagaacaatgatatttgtaggtttgagaaggaatcagtataacatt 671
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 488  agtgcctcacaatttagaacaatgatatttgtaggtttgagaaggaatcattataacatt 429

                             
Query: 672  gtgaggaacatttgaac 688
            || ||||||||||||||
Sbjct: 428  gtaaggaacatttgaac 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)