BAC Information

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BAC

Clone NameMSMg01-548I10
Chromosome1 (Build37)
Map Location 183,920,758 - 183,921,095
singlet/doubletsinglet
Overlap geneEnah
Upstream geneEphx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr, EG433384
Downstream geneSrp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548I10.T7 (MSMg01no548_i10.b1)MSMg01-548I10.TJ (MSMg01no548_i10.g1)
ACCAG612851AG612852
length803779
length of high quality
(start - end)
79 (69 - 147)344 (73 - 416)
definitionCHROMAT_FILE: MSMg01no548_i10.b1 PHD_FILE: MSMg01no548_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:28 2005CHROMAT_FILE: MSMg01no548_i10.g1 PHD_FILE: MSMg01no548_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCACCTTTXXXXXXXXXXXXXXXXXXXXXXTTATATTTCAGAGGATCCGC
GGAATTCCACACCCCTAAACCCCTTACCCCATAAAACCCCCTAGCTTTCG
AGCCTCGTGGCCGACATCCGTTATCTCCTGTGTGGGATGCATGTCGGTCC
GGAGCTCCGTCATTAAACGACCTCGTGTAATTACATCAAGGCCTTTTCAT
GATTCTTTGGGTGCCCGCCGAATCGGGAATTGAGTGGGGGTTTCCCCACT
TAGGTTCTATCACTAGCACCGCCTACAGTATGTGGGGTCTTCCTACATCA
TATAGTAATTAATAACTCACCTCACAGAGCCAATCTGATCACGGCAGTTC
TACAACTGTGATATCTTCTCTGTTTGCTGGGAACTTCTTGTCTAAGTGAC
AACTATAGCTAACCTGTGACAACAACAAATACTGGCTAAAGTCTTCTTCA
CAAGGAAAGAAAACAAATCTATACCTTAACTAGCAAACCTAATATATCCA
TTTTCTTCTTAATAATCCCACACATAATTTTTTTACTTCATTTTATATCC
TTCCTATCTCTTCTACCTGGGATACCTTTCATGTAAATCCTTTCATTTAT
TACCTTGATTCCTACAAATGACTAGGCTTAGCTACTCTCCTTTTTTTCCC
CGAAAATATTATAACAATATAACACTTTTAAACACAAGTATTAAATTATA
CTTGTGTTTTTAATTGTATAATTTTCTTAATTTGATAATTGTTTTTTTGA
TTGCCCTTCATTAGTCCTACTTGATTGTACTAATTATTATATTTATTATA
CCG
CATGACATTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGACATCCAGGGCTACATAGAGAAAC
CCTGTCTCGAAAAACCAAAAAAAGAAAAAAAAGAAAAAAAAGAAAGAAAA
AGAAAAGACAAAACAAGACTTCTCTAATCATTCAAATTGAGTATTCCTTG
CTCTAGGTCCACCCTTTTCCTGCTCCGTATTTTATCTTCATTGCACTTAC
TGAGAACAACAGCTTTATTGATATCTCTTTCTCCAGCCTCTACTAGAAAA
AGCTTTGTGAGTGCATGGACACGTTCACCTCCACGTTCCCAGGCTGAAGA
ATAGTGCTTATCAGTAATAACACTTGTTAGCCAATAAATCCTTCTACTTT
TTAGGTTGCCAATTTTCTATAATAGACATATGATTTTTTTTTCACCCTGT
TTTTAAATACGAAACTAGGGGAAATGGGGCCATAGCACATCCTGTATTCA
AAGAAAACAGATCAAACCCCTGGTCATGGTTTTTCAGTCCTTAACAAGAC
CAAAAATCCTAATCCCTAACTCCCTTCCCAAAAAAAATCCCAATGGGAAC
CCCTAACAGAAATTAACTTTTAAAGGAAGGGGAAATAAAACCAGTCTTGG
CCCTTTATTCTTAACAGGAGATACCTTTAAAAGGGTTTTTTTGAGATTAA
AAAAAAACTTTTTTTACAATCACCCCCCATAAACTGCATTATTTTCTAAT
ACTTTTGGTTATATAACAGGCGAATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_i10.g1 MSMg01no548_i10.g1 CHROMAT_FILE:
MSMg01no548_i10.g1 PHD_FILE: MSMg01no548_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:28 2005
         (344 letters)



>mm_chr1_183920555_183921295
          Length = 741

 Score =  596 bits (308), Expect = e-175
 Identities = 334/344 (97%), Gaps = 6/344 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacatccagggctacatagagaaaccctgtctcgaaaaaccaaaaaaagaaaaaaaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 204 caggacatccagggctacatagagaaaccctgtctcgaaaaa-caaaaaaa-aaaaaaaa 261

                                                                       
Query: 61  gaaaaaaaagaaagaaaaagaaaagacaaaacaagacttctctaatcattcaaattgagt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 -aaaaaaaagaaagaaaaagaaaagacaaaacaagacttctctaatcattcaaattgagt 320

                                                                       
Query: 121 attccttgctctaggtccacccttttcctgctccgtattttatcttcattgcacttactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attccttgctctaggtccacccttttcctgctccgtattttatcttcattgcacttactg 380

                                                                       
Query: 181 agaacaacagctttattgatatctctttctccagcctctactagaaaaagctttgtgagt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 agaacaacagctttattgatatctctttctccagcctctactagaaaaagctctgtgagt 440

                                                                       
Query: 241 gcatggacacgttcacctccacgttcccaggctgaagaatagtgcttatcagtaataaca 300
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatggacacgttcacctccacactcccaggctgaagaatagtgcttatcagtaataaca 500

                                                       
Query: 301 cttgttagccaataaatccttctactttttaggttgccaatttt 344
           ||||||||||||||||||||   ||||||||| |||||||||||
Sbjct: 501 cttgttagccaataaatcct---actttttagtttgccaatttt 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 741
Length adjustment: 9
Effective length of query: 335
Effective length of database: 732
Effective search space:   245220
Effective search space used:   245220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)