Query= MSMg01no548_l13.b1 MSMg01no548_l13.b1 CHROMAT_FILE:
MSMg01no548_l13.b1 PHD_FILE: MSMg01no548_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:43 2005
(570 letters)
>mm_chr1_108419021_108419989
Length = 969
Score = 1013 bits (524), Expect = 0.0
Identities = 559/574 (97%), Gaps = 8/574 (1%)
Strand = Plus / Minus
Query: 4 ggaattctatactgctccagcacttgcatagcttgggcctcaattaagatgtttgtttac 63
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 961 ggaattctatactgctccagcacttgcatagcttgggcctcaattaggatgtttgtttac 902
Query: 64 ttatctgctaatctcatta-tttttttttaaattcacttctcagtgagagttcagaatcc 122
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ttatctgctaatctcattattttttttttaaattcacttctcagtgagagttcagaatcc 842
Query: 123 agcattcaactatttctgaaatatgaccaaagtggaa------aaagagaaagagaaaga 176
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 841 agcattcaactatttctgaaacatgaccaaagtggaaaaagagaaagagaaagagaaaga 782
Query: 177 gaaagagaacggcattcagctcagggactggattacacagaggctcaaatgcatgtctca 236
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaaagagaacgccattcagctcagggactggattacacagaggctcaaatgcatgtctca 722
Query: 237 aagtacttcttccctaataggaaaccattttctacagagaaggcaaatgcacaaaggaaa 296
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 721 aagtacttcttccctaataggaaacca-tttctactgagaaggcaaatgcacaaaggaaa 663
Query: 297 aactttgtagaattttactagtgattttatcgtggtaaagtaagccacaaccccagtgag 356
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 662 aactttgtagaattttactagggattttatcgtggtaaagtaagccacaatcccagtgag 603
Query: 357 aattctcactgctattgctcgaaacgcatagagcctgtatttattttcagcagggtttgg 416
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 602 aattctcactgctattgctcgaaacgcatagagcccgtatttattttcagcagggtttgg 543
Query: 417 tgtcatttttattattgctctgcacaaaaagcaaaacagaaaccacctgagcttctaaga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tgtcatttttattattgctctgcacaaaaagcaaaacagaaaccacctgagcttctaaga 483
Query: 477 gatagatcagatattatctccccctccctgctttccaaaggaagaaaccacacaaagtga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gatagatcagatattatctccccctccctgctttccaaaggaagaaaccacacaaagtga 423
Query: 537 tttgctctggggtcaaccagcctgttagtggctg 570
||||||||||||||||||||||||||||||||||
Sbjct: 422 tttgctctggggtcaaccagcctgttagtggctg 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 969
Length adjustment: 10
Effective length of query: 560
Effective length of database: 959
Effective search space: 537040
Effective search space used: 537040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_l13.g1 MSMg01no548_l13.g1 CHROMAT_FILE:
MSMg01no548_l13.g1 PHD_FILE: MSMg01no548_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:43 2005
(653 letters)
>mm_chr1_108264318_108265369
Length = 1052
Score = 1224 bits (633), Expect = 0.0
Identities = 648/653 (99%), Gaps = 1/653 (0%)
Strand = Plus / Plus
Query: 1 ctggtgtcataaaataactgcctcatactctatattgttacttgttctataaccatagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ctggtgtcataaaataactgcctcatactctatattgttacttgttctataaccacagag 260
Query: 61 cctggtagacatgttttatgatattaaaagacatgatttaataagaaaacttattgttat 120
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 cctggtagatatgttttatgatattaaaagacatgatttaata-gaaaacttattgttat 319
Query: 121 atatgaggcatatgtttatatcaagacaagaaagagataatctttagcatttgagaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atatgaggcatatgtttatatcaagacaagaaagagataatctttagcatttgagaggag 379
Query: 181 gtgacacagcaatagtgtttcttgatgcatttttcaatgttttgggacaagtggaaccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgacacagcaatagtgtttcttgatgcatttttcaatgttttgggacaagtggaaccat 439
Query: 241 gagtagataaaatagcaggtattaaattcatgacaattgtcatagtccctggctgttcat 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagtagataaaatggcaggtattaaattcatgacaattgtcatagtccctggctgttcat 499
Query: 301 caccagggtgggaatggatctaaggactgagtgctgtgaggtggacttgttctgccctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caccagggtgggaatggatctaaggactgagtgctgtgaggtggacttgttctgccctcc 559
Query: 361 acactgacagacggtgtgaagctctgcttcctgagtcgtgccctagttgctcacctgcat 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 560 acactgacagacggtgtgaagctctgcttcctgagtcgtgccctagttgctcacttgcat 619
Query: 421 tattcaaattagagatggctgaaaaaagttattcttaagtaaaatgctaaattacattga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tattcaaattagagatggctgaaaaaagttattcttaagtaaaatgctaaattacattga 679
Query: 481 aatatgtaactagagtaaggttgaggcgacccatctacatagatgattaataagacatgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatatgtaactagagtaaggttgaggcgacccatctacatagatgattaataagacatgg 739
Query: 541 acatagtttcttttgcagccatcgtgaataaggaatgaaggagaggagatgttgtatggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 acatagtttcttttgcagccatcgtgaataaggaatgaaggagaggagatgttgtatggc 799
Query: 601 ttgctcctcacccctgctttgtaatcatccatggtcccagacaggtttgagtg 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttgctcctcacccctgctttgtaatcatccatggtcccagacaggtttgagtg 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1052
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1042
Effective search space: 670006
Effective search space used: 670006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
