BAC Information

Click to search

BAC

Clone NameMSMg01-548L20
Chromosome1 (Build37)
Map Location 173,723,837 - 173,724,427
singlet/doubletsinglet
Overlap geneSlamf1
Upstream geneAtf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098
Downstream geneCd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548L20.T7 (MSMg01no548_l20.b1)MSMg01-548L20.TJ (MSMg01no548_l20.g1)
ACCAG613015AG613016
length731734
length of high quality
(start - end)		595 (49 - 643)476 (76 - 551)
definitionCHROMAT_FILE: MSMg01no548_l20.b1 PHD_FILE: MSMg01no548_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:44 2005CHROMAT_FILE: MSMg01no548_l20.g1 PHD_FILE: MSMg01no548_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTAGTATTTTTTTCTTGCATCTGGTTATAAAATTCATGCAT
GTTTTTGAACTCTCCTTGGTTTATCAACTATCAATGTATGAACGTGCTAT
TTTAGGATATGTTTATCAAGTTAACTATTAATGGGCATCTGAGTTATTTC
CAGTTTGAGGTCATTATGAAAATTACAGTTATGAAATGTATATGAACATG
TCTACATGTTTGATGGGTACATGCTTCGAAGTAAATTTGCTGAATGATGA
GAATATTTGGATTCCCCAGTTGACTGGTTAAGACCAAATTGTTTTTCAGA
GTGGGGGTCAAATTCCTTTTCCAATAAATAAGTTTTAATAGTTTACATGC
TAGCCAAAAATCGCTACTATCAGCCTTTTATTCATTCTAGTAGGGAGGTC
TTACTATGGCTTTTTTTCCTGGTAAGTAACAACTTCTTATATGTTTATTG
CCATACTAAAATCACCCGACTTTCAAATCTCTTACCCGTTTACCCTTGTA
TAAGCCAAAAGCCCATTTTAAAAGTGAGCCCTTTGGAGGTTAGATCCATA
TCATGTGTGGCTCAGAAGATGTACTGATAAAGAACACTTCTTAATGTCAG
GGTAGAACAATCTATAACCTCATCCTTTACAGTTTACAGTTCTTATAACA
TGTTGGAGAAACTTTTCTCAGTCTTGGGTAA

NAACATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACAAAGTTGCAGGTCACCCAGTTA
CACACATACGAAAAAAAAAAAAACCCAAACCAAAACAAAAAAAACTAGTT
TGGCTGGGTGTGGTGGCTCATGCCTTCAACCCCAGCACTTGGGAGGCAAA
GGCAAGTGCATCTCTGTGAGTTCAAGGCTAGCCTGGTCTACATAGTTCCA
GGAGAGCCAGGGTTATGTAGAGAAACTCTGTCTCACCAAGTGTGATTGTT
TGTATATCCTTGGACCAGGGAGTGGCACCATCTGGAGGTGTGACCTTGTT
GGAATAGATGTGACCTGGTTGGAATGGGTGTGTCACTGTGGGTGTGTGCA
TAAGATCCTCACCCTAGTTGCCTGGAAGTCAGTCTTCCACTAGCAGCCTT
TGGATGAAGACATAGAACCCTCAGCTCTACCTGCGCCATGCCTGCCTGGA
TACTGCCATGCACCCACCTTGATGATAATGGACTGAACCTCTGAACCTGT
AAGCCAGCCCCAATTAAATGTTGTTTTTTATAAGACTTGCCTTGGTCATG
GTGTCTGTTCACAGCAGTAAAACCCTAACTAAGACAGAAGTTGGTACCAG
TAAGTGGGGTAATGCTGTGTTTAGGCCTTGACCATGCTTTTTATTTGAAA
GAAATGGGGCCTTTTTGGGAACTTTTGGAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_l20.b1 MSMg01no548_l20.b1 CHROMAT_FILE:
MSMg01no548_l20.b1 PHD_FILE: MSMg01no548_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:44 2005
         (595 letters)



>mm_chr1_173723633_173724627
          Length = 995

 Score = 1143 bits (591), Expect = 0.0
 Identities = 591/591 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattagtatttttttcttgcatctggttataaaattcatgcatgtttttgaactc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattagtatttttttcttgcatctggttataaaattcatgcatgtttttgaactc 264

                                                                       
Query: 65  tccttggtttatcaactatcaatgtatgaacgtgctattttaggatatgtttatcaagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccttggtttatcaactatcaatgtatgaacgtgctattttaggatatgtttatcaagtt 324

                                                                       
Query: 125 aactattaatgggcatctgagttatttccagtttgaggtcattatgaaaattacagttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aactattaatgggcatctgagttatttccagtttgaggtcattatgaaaattacagttat 384

                                                                       
Query: 185 gaaatgtatatgaacatgtctacatgtttgatgggtacatgcttcgaagtaaatttgctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaatgtatatgaacatgtctacatgtttgatgggtacatgcttcgaagtaaatttgctg 444

                                                                       
Query: 245 aatgatgagaatatttggattccccagttgactggttaagaccaaattgtttttcagagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatgatgagaatatttggattccccagttgactggttaagaccaaattgtttttcagagt 504

                                                                       
Query: 305 gggggtcaaattccttttccaataaataagttttaatagtttacatgctagccaaaaatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggggtcaaattccttttccaataaataagttttaatagtttacatgctagccaaaaatc 564

                                                                       
Query: 365 gctactatcagccttttattcattctagtagggaggtcttactatggctttttttcctgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctactatcagccttttattcattctagtagggaggtcttactatggctttttttcctgg 624

                                                                       
Query: 425 taagtaacaacttcttatatgtttattgccatactaaaatcacccgactttcaaatctct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taagtaacaacttcttatatgtttattgccatactaaaatcacccgactttcaaatctct 684

                                                                       
Query: 485 tacccgtttacccttgtataagccaaaagcccattttaaaagtgagccctttggaggtta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tacccgtttacccttgtataagccaaaagcccattttaaaagtgagccctttggaggtta 744

                                                              
Query: 545 gatccatatcatgtgtggctcagaagatgtactgataaagaacacttctta 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gatccatatcatgtgtggctcagaagatgtactgataaagaacacttctta 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |