Query= MSMg01no548_o13.b1 MSMg01no548_o13.b1 CHROMAT_FILE:
MSMg01no548_o13.b1 PHD_FILE: MSMg01no548_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:58 2005
(228 letters)
>mm_chr1_97364728_97365354
Length = 627
Score = 398 bits (206), Expect = e-115
Identities = 221/226 (97%), Gaps = 5/226 (2%)
Strand = Plus / Minus
Query: 5 gaattctctgtttaactctgtaccccagttttaatagggttatttggttctctgaagttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gaattctctgtttaactctgtaccccagttttaatagggttatttggttctctgaagttt 477
Query: 65 agcttcttgagttctttgtatattttgcatattgcctgctctct-gccagcagctctagg 123
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 476 agcttcttgagttctttgtatattttgcatattgcctgctct-tggccagcagctctagg 418
Query: 124 ctgagaggagagaaccttg-tccagccaagtcttctccagggctgaaacaggatggtgaa 182
||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 417 ctgagaggagagaac-ttggtccagccaagtct-ctccagggctgaaacaggatggtgaa 360
Query: 183 tgtcacagctcagatctcctgcagactggagaataaccaccctgag 228
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgtcacagctcagatctcctgcagactggagaataaccaccctgag 314
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 627
Length adjustment: 9
Effective length of query: 219
Effective length of database: 618
Effective search space: 135342
Effective search space used: 135342
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no548_o13.g1 MSMg01no548_o13.g1 CHROMAT_FILE:
MSMg01no548_o13.g1 PHD_FILE: MSMg01no548_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:58 2005
(437 letters)
>mm_chr1_97226987_97227822
Length = 836
Score = 822 bits (425), Expect = 0.0
Identities = 434/437 (99%), Gaps = 1/437 (0%)
Strand = Plus / Plus
Query: 1 ttagaattccagttcgagggaggaaaattggggctgcctccttatcctggtacaatctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaattccagttcgagggaggaaaattggggctgcctccttatcctggtacaatctca 260
Query: 61 ttccatttgtttagtatttatttgatttccatctaaaatataaatatccccattctgtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccatttgtttagtatttatttgatttccatctaaaatataaatatccccattctgtcc 320
Query: 121 cttccctcacctaagagtctccgctcctattagttttccagatatggatccaaatcccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccctcacctaagagtctccgctcctattagttttccagatatggatccaaatcccac 380
Query: 181 agggctgggaatcctgcagttttctttgtttcctgctgcatgaagaaccttagcattcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggctgggaatcctgcagttttctttgtttcctgctgcatgaagaaccttagcattcta 440
Query: 241 cactagcaattgtaattaattttcaatcatatcttacctctcctgcattaatacttataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactagcaattgtaattaattttcaatcatatcttacctctcctgcattaatacttataa 500
Query: 301 aattatcctttatcacacagattctttgttgttgatattttgtttgcgtgttggtttgtt 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 aattatcctttatcacacagattctttgttgttgatattttgtttgcatgttggtttgtt 560
Query: 361 tttaaagcacgtaaccatttctagggaggaaggggaatcttcttccttacaggttcataa 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 tt-aaagcacgtaaccatttctagggaggaaggggaatcttcttccttacaggtgcataa 619
Query: 421 acttagcttttgtactg 437
|||||||||||||||||
Sbjct: 620 acttagcttttgtactg 636
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 836
Length adjustment: 9
Effective length of query: 428
Effective length of database: 827
Effective search space: 353956
Effective search space used: 353956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
