BAC Information

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BAC

Clone NameB6Ng01-001E08
Chromosome13 (Build37)10 (Build37)
Map Location 87,396,354 - 87,397,470104,053,548 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001E08.bB6Ng01-001E08.g
ACCDH839642DH839643
length1,1091,016
definitionDH839642|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E08, 5' end.DH839643|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,396,354 - 87,397,470)(104,053,548 - 104,054,363)
sequence
gaattcaactaacctgagataaaacatcactgaccccaatccctgaatgg
ggcttcggcagtgacctaagctgtagcagtatggatttgaagttgactag
atatgaggggcctacagagaacagcagagaggcatctatgcccaagaaag
cctatctgtgtttgcttccctgtatcctctgctccccaccctgcctcccc
catctccaaagagggacacagacaactcagatctttttacactcagcttc
tccctgttaataaataattgggaaacaaaggtacaatggactccaaacca
ggtaattcgtttctataaagagagaaatataaccttttgatacttgaaga
tgatataatgatacattgctctagtaagtcttaccagatactcatattct
gtctaacgtaggctccatgggaattttgggtttaaattctggtttgacaa
actgcctcttttaagcaggtttagtacctaaaaatgggaaatttcacctg
agtttcagaaccagatagggagtattagtcactgactccaagtagagaga
gcactgataatcacctgctatgaacagttattaattaatagaagtctgtg
gctctaggtagagagcataacagatagatattataataggtattaattaa
ataaatgtttgtggctcctggtagagagcacaacagacaggatggttact
ctaggcagagaggttattaattatgagagatttcacgttcagcactagat
agggaaattcgtcactaactccaagtacagagagcagtgattatctcctg
ctatgaataggtataattaatagaagtctgtggctacacatagagagcat
aacagatagatattataatggttattaattaagtaaatgtttgtagctca
aggtagaaagcgccctaataagttttacaggatactcaatactcatattc
tgtctaacaggggctcatgggaatttgggtttaaatcctggtttgacaag
ctgcttctatagcagtatagaaaggaaagaaaagaaggaaaggaaaggaa
aggaaatgaaaaaagaagtgtgaatcaattcttttttttgttttttgggg
atttttggt
gaattctcacctgaggaatactgaatgactgagaagcaccggaaaagaag
gttcagcatcgttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctgttgaggatgtggagaaagaggaacactcctccattgttggt
aggattgcaagcttgtacaaccactctggaaatcattctggtaattcctc
agaaaattggacatagtgctaccagaggatcctgaaataccactcctggg
catatatccagaagatgttccaaaaggcaagaaggagacatgctccacta
tgttcatagcagccttatttataatagccagaaggtggaaagaacccaga
tgcccctcaacagaggaatggatatagaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaagaaagaatttatgaaattcctaggca
aatggatggacctggagggcatcatcctgagtgaggtaacccaaacacaa
aataactcagatgttatgtactcacaatattaacccagaaacttagatgt
tgttggtgagataaatttgaaaatataccatttttatcagttaaagtggc
tgtttcaacctggagcccaaaatcaatataaaagtgaaactataggccac
ttttggttctattattttgtgtccaagtttttataatatgaaagttcatt
tttattagatattttcttcatttacatttcaaatgctattctgaaattcc
cctatacacccctcctgccctgttccccaacccatccactcctgcttcct
ggccctggaagtctcttgtactgtgttgggagccgcccccacattcgccg
tcacaagatggcgctgacatcctgtgttctaagtggtaacaaataatctg
cgcatgtgccaagggtatacgactacttgtactctacctttcccgtaaac
gtcagctcggccatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_87396354_87397470
seq2: B6Ng01-001E08.b_46_1154

seq1  GAATTCAACTAACCTGAGATAAAACATCACTGACCCCAATCCCTGAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTAACCTGAGATAAAACATCACTGACCCCAATCCCTGAATGG  50

seq1  GGCTTCGGCAGTGACCTAAGCTGTAGCAGTATGGATTTGAAGTTGACTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCGGCAGTGACCTAAGCTGTAGCAGTATGGATTTGAAGTTGACTAG  100

seq1  ATATGAGGGGCCTACAGAGAACAGCAGAGAGGCATCTATGCCCAAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGGGGCCTACAGAGAACAGCAGAGAGGCATCTATGCCCAAGAAAG  150

seq1  CCTATCTGTGTTTGCTTCCCTGTATCCTCTGCTCCCCACCCTGCCTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTGTGTTTGCTTCCCTGTATCCTCTGCTCCCCACCCTGCCTCCCC  200

seq1  CATCTCCAAAGAGGGACACAGACAACTCAGATCTTTTTACACTCAGCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCAAAGAGGGACACAGACAACTCAGATCTTTTTACACTCAGCTTC  250

seq1  TCCCTGTTAATAAATAATTGGGAAACAAAGGTACAATGGACTCCAAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTAATAAATAATTGGGAAACAAAGGTACAATGGACTCCAAACCA  300

seq1  GGTAATTCGTTTCTATAAAGAGAGAAATATAACCTTTTGATACTTGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTCGTTTCTATAAAGAGAGAAATATAACCTTTTGATACTTGAAGA  350

seq1  TGATATAATGATACATTGCTCTAGTAAGTCTTACCAGATACTCATATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAATGATACATTGCTCTAGTAAGTCTTACCAGATACTCATATTCT  400

seq1  GTCTAACGTAGGCTCCATGGGAATTTTGGGTTTAAATTCTGGTTTGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAACGTAGGCTCCATGGGAATTTTGGGTTTAAATTCTGGTTTGACAA  450

seq1  ACTGCCTCTTTTAAGCAGGTTTAGTACCTAAAAATGGGAAATTTCACCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTCTTTTAAGCAGGTTTAGTACCTAAAAATGGGAAATTTCACCTG  500

seq1  AGTTTCAGAACCAGATAGGGAGTATTAGTCACTGACTCCAAGTAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGAACCAGATAGGGAGTATTAGTCACTGACTCCAAGTAGAGAGA  550

seq1  GCACTGATAATCACCTGCTATGAACAGTTATTAATTAATAGAAGTCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGATAATCACCTGCTATGAACAGTTATTAATTAATAGAAGTCTGTG  600

seq1  GCTCTAGGTAGAGAGCATAACAGATAGATATTATAATAGGTATTAATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGGTAGAGAGCATAACAGATAGATATTATAATAGGTATTAATTAA  650

seq1  ATAAATGTTTGTGGCTCCTGGTAGAGAGCACAACAGACAGGATGGTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTTTGTGGCTCCTGGTAGAGAGCACAACAGACAGGATGGTTACT  700

seq1  CTAGGCAGAGAGGTTATTAATTATGAGAGATTTCACGTTCAGCACTAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAGAGAGGTTATTAATTATGAGAGATTTCACGTTCAGCACTAGAT  750

seq1  AGGGAAATTCGTCACTAACTCCAAGTACAGAGAGCAGTGATTATCTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAATTCGTCACTAACTCCAAGTACAGAGAGCAGTGATTATCTCCTG  800

seq1  CTATGAATAGGTATAATTAATAGAAGTCTGTGGCTACACATAGAGAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAATAGGTATAATTAATAGAAGTCTGTGGCTACACATAGAGAGCAT  850

seq1  AACAGATAGATATTATAATGGTTATTAATTAAGTAAATGTTTGTAGCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATAGATATTATAATGGTTATTAATTAAGTAAATGTTTGTAGCTCA  900

seq1  AGGTAGAAAGCGCCCTAATAAGTTTTACAGGATACTCAATACTCATATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAAAGCGCCCTAATAAGTTTTACAGGATACTCAATACTCATATTC  950

seq1  TGTCTAACAGGGGCTCCATGGGAATTTTGGGTTTAAATCCTGGTTTGACA  1000
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  TGTCTAACAGGGGCT-CATGGGAA-TTTGGGTTTAAATCCTGGTTTGACA  998

seq1  AGCTGCTTCTTATAAGCAGGTATAGAAAGGAAAGAAAAG-AGGAAAGGAA  1049
      ||||||||| ||| |||| |||||||||||||||||||| ||||||||||
seq2  AGCTGCTTC-TAT-AGCA-GTATAGAAAGGAAAGAAAAGAAGGAAAGGAA  1045

seq1  AAGGAAAAGGAAATGAAAATAGAAGTGTGAATCAATTCTTTTTTTTTGTT  1099
      |  | |||||||||||||| |||||||||||||||||| |||||||||||
seq2  A--GGAAAGGAAATGAAAAAAGAAGTGTGAATCAATTC-TTTTTTTTGTT  1092

seq1  TTGTGGGGTATTTTTGTT  1117
      || ||||| ||||||| |
seq2  TTTTGGGG-ATTTTTGGT  1109

seq1: chr10_104053548_104054363
seq2: B6Ng01-001E08.g_67_662 (reverse)

seq1  CTAAGTTTCTGGGCTAATATCCACTTATCAGTGAGTACATATTGCGCGAG  50
      ||||||||||||| ||||||          |||||||||||      |||
seq2  CTAAGTTTCTGGGTTAATAT---------TGTGAGTACATAACATCTGAG  41

seq1  TTCCTTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCCAT  100
      ||  |||||| |||||||||| ||||||||||||| | ||||||||||||
seq2  TTATTTTGTGTTTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCAT  91

seq1  CCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATTTA  150
      ||||||||||||||||||||||||||| ||||||||||||||        
seq2  CCATTTGCCTAGGAATTTCATAAATTCTTTCTTTTTAATAGC--------  133

seq1  CATTTAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAAATA  200
                                                        
seq2  --------------------------------------------------  133

seq1  ATTTAATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTAATT  250
                                                        
seq2  --------------------------------------------------  133

seq1  AAATTAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATAATA  300
                                                        
seq2  --------------------------------------------------  133

seq1  ATTTTATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATTACA  350
            | ||||                             |||      
seq2  ------TGAGTA-----------------------------GTA------  142

seq1  TTACATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCTAT  400
                   ||||||||||||||||||||||||||||| |||| ||
seq2  -------------CTCCATTGTGTAAATGTACCACATTTTCTATATCCAT  179

seq1  TCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAA  450
      |||||||||||||||||||||||||||||||| || ||||||||||||||
seq2  TCCTCTGTTGAGGGGCATCTGGGTTCTTTCCACCTTCTGGCTATTATAAA  229

seq1  TAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGG  500
      ||||||||||||||| |||||||||||||| |||||||| ||  ||||  
seq2  TAAGGCTGCTATGAACATAGTGGAGCATGTCTCCTTCTTGCCTTTTGGAA  279

seq1  CATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGT  550
      |||||||||||||||||||||| || |||||| | |||||||| ||||| 
seq2  CATCTTCTGGATATATGCCCAGGAGTGGTATTTCAGGATCCTCTGGTAGC  329

seq1  ACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTG  600
      ||||||||||||||||||| |||   |||||  |||||||||||||||||
seq2  ACTATGTCCAATTTTCTGAGGAATTACCAGAATGATTTCCAGAGTGGTTG  379

seq1  TACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCAC  650
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  TACAAGCTTGCAATCCTACCAACAATGGAGGAGTGTTCCTCTTTCTCCAC  429

seq1  ATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTG  700
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAACAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTG  479

seq1  ACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGAT  529

seq1  GATTAAGGATGTTGAACATT-TTTTCAGGTGCTTCTCTGCCATTCGGTAT  799
      |||||| |||| ||||| || ||||| |||||||||| | ||||| ||||
seq2  GATTAACGATGCTGAACCTTCTTTTCCGGTGCTTCTCAGTCATTCAGTAT  579

seq1  TCCTCAGGTGAGAATTC  816
      |||||||||||||||||
seq2  TCCTCAGGTGAGAATTC  596