BAC Information

Click to search

BAC

Clone NameB6Ng01-001H10
Chromosome10 (Build37)
Map Location 39,524,620 - 39,624,614
singlet/doubletdoublet
Overlap geneRev3l, LOC213332, 4930547M16Rik
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, EG666304
Downstream geneLOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001H10.bB6Ng01-001H10.g
ACCDH839775DH839776
length1,109445
definitionDH839775|Mus musculus domesticus DNA, BAC clone: B6Ng01-001H10, 5' end.DH839776|Mus musculus domesticus DNA, BAC clone: B6Ng01-001H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,623,489 - 39,624,614)(39,524,620 - 39,525,070)
sequence
gaattcctataactttgaggtcaaggaagtgatagcttattaaattctgc
attactgaaagccagaagatatgggtctccctttgcacagacagccttgg
tactttagtaatttctagaactattattaaaaaagaaaaaaaagacacta
ctatccaaattatgagcttacaagacataaactcacagaaaagaaaacat
aattcattccatcttcaaaaagacaaagatctttgtaactattgcaaaaa
gcccggccatttcaagaagactccaagaaactgaaataggaattctctca
ctgaagtagcaggcctgagagaacttgaaagaaaatggagaatagaacag
gactgctccccaaaataagggaggttttcattgctaccatggtaagagaa
atggattattaaccaacaggaaacaaagcctggggctactgggttaattc
ctaccagacttaaaatcaacctcagcataaaaataaaacgcaagtggtgg
gaattactaatttattcttattgactttaaggcaaatcctattgtcttag
tgctgttctattgctaggaagaaggaccacggcaattcttataaaggaga
gcatttaactggggctgacttacagttaagagtcttagtctattaagctc
atagcaggggacaggagctgagagttctacatccagatcagcaggcagaa
gaaagagagagacactgggcccctacttcagcatctgacacttcatagcc
cacccctagtggcatacttcctccaacagtcatagctactctaacaaggc
cacacattctagtcccttcaaattgtgcctctccctatgagccaatggga
gccactttcatttaaaccaccacacctataatttaataggaagagactaa
ggcatcccctctttctactggtaaactgtgtccctgttcatttgttgaga
tgtgactgtagaaacaaacgctcacatattcacctcccaaagcagatagt
aactttctttaattcaggacactgaaaagcccctatcccacatatctcat
gcacttgtgagggatcaacaagactcatagaagaaacaatcattttctcc
acaattcag
atttaatattctcaggttttctcattactgccaaagtgtgaattcctgca
taagaaaaatctcagatcccagcaacaacaacttgggaagtttgtactaa
ttactatatttgttgacattctttctttacagttctttattgttggaagg
tgttgaacccctgagtacatgtgaactagaagtggatgccgtagctgctg
acatcttaaataggctggacattgagggtatgcgcatgattattcctgat
atgcattgttactcacaaaatgtaatgagaaagcagagcagaggtgttac
cagagaagtgagatacggaaggagaaggcaaggtttacctgcgggttata
taccatggacagaagtttagactcatttctcatcagtgtttgaattttac
ttagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_39623489_39624614
seq2: B6Ng01-001H10.b_44_1152 (reverse)

seq1  CTGAAATTTGTGGAAGGAGATGATTGGTTTTCTTCTATGAGGTCTTGTTT  50
      |||||  |||||| || | |||||||  |||||||||||| |||||| ||
seq2  CTGAA--TTGTGG-AGAAAATGATTG--TTTCTTCTATGA-GTCTTG-TT  43

seq1  GATCCCTTCACAAGTGGCATGGAGAATATGTTGGGATAGGGGCTTTTCAG  100
      |||||| |||||||| |||| ||| ||||| |||||||||||||||||||
seq2  GATCCC-TCACAAGT-GCAT-GAG-ATATG-TGGGATAGGGGCTTTTCAG  88

seq1  TGTTCCTGAATTAAAGAAAGTTACTATCTGCTTTGGGAGGTGAATATGTG  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TCCTGAATTAAAGAAAGTTACTATCTGCTTTGGGAGGTGAATATGTG  137

seq1  AGCGTTTTGTTTCCTAACAGTCACATCTCAACAAATGAACAGGGACACAG  200
      |||| ||||||||   ||||||||||||||||||||||||||||||||||
seq2  AGCG-TTTGTTTC--TACAGTCACATCTCAACAAATGAACAGGGACACAG  184

seq1  TTTACCAGTAGAAAGAGGGGATGCCTTAGTCTCTTCCTATTTAAATTATA  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTACCAGTAGAAAGAGGGGATGCCTTAGTCTCTTCCTA-TTAAATTATA  233

seq1  GGTGTGGTGGTTTAAATGAAAGTGGCTCCCATTGGCTCATAGGGAGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTGGTTTAAATGAAAGTGGCTCCCATTGGCTCATAGGGAGAGGC  283

seq1  ACAATTTGAAGGGACTAGAATGTGTGGCCTTGTTAGAGTAGCTATGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTGAAGGGACTAGAATGTGTGGCCTTGTTAGAGTAGCTATGACTG  333

seq1  TTGGAGGAAGTATGCCACTAGGGGTGGGCTATGAAGTGTCAGATGCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAAGTATGCCACTAGGGGTGGGCTATGAAGTGTCAGATGCTGAA  383

seq1  GTAGGGGCCCAGTGTCTCTCTCTTTCTTCTGCCTGCTGATCTGGATGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGCCCAGTGTCTCTCTCTTTCTTCTGCCTGCTGATCTGGATGTAG  433

seq1  AACTCTCAGCTCCTGTCCCCTGCTATGAGCTTAATAGACTAAGACTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCAGCTCCTGTCCCCTGCTATGAGCTTAATAGACTAAGACTCTTA  483

seq1  ACTGTAAGTCAGCCCCAGTTAAATGCTCTCCTTTATAAGAATTGCCGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGTCAGCCCCAGTTAAATGCTCTCCTTTATAAGAATTGCCGTGG  533

seq1  TCCTTCTTCCTAGCAATAGAACAGCACTAAGACAATAGGATTTGCCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTCCTAGCAATAGAACAGCACTAAGACAATAGGATTTGCCTTAA  583

seq1  AGTCAATAAGAATAAATTAGTAATTCCCACCACTTGCGTTTTATTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATAAGAATAAATTAGTAATTCCCACCACTTGCGTTTTATTTTTAT  633

seq1  GCTGAGGTTGATTTTAAGTCTGGTAGGAATTAACCCAGTAGCCCCAGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGTTGATTTTAAGTCTGGTAGGAATTAACCCAGTAGCCCCAGGCT  683

seq1  TTGTTTCCTGTTGGTTAATAATCCATTTCTCTTACCATGGTAGCAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCTGTTGGTTAATAATCCATTTCTCTTACCATGGTAGCAATGAA  733

seq1  AACCTCCCTTATTTTGGGGAGCAGTCCTGTTCTATTCTCCATTTTCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCCTTATTTTGGGGAGCAGTCCTGTTCTATTCTCCATTTTCTTTC  783

seq1  AAGTTCTCTCAGGCCTGCTACTTCAGTGAGAGAATTCCTATTTCAGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTCTCAGGCCTGCTACTTCAGTGAGAGAATTCCTATTTCAGTTTC  833

seq1  TTGGAGTCTTCTTGAAATGGCCGGGCTTTTTGCAATAGTTACAAAGATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTCTTCTTGAAATGGCCGGGCTTTTTGCAATAGTTACAAAGATCT  883

seq1  TTGTCTTTTTGAAGATGGAATGAATTATGTTTTCTTTTCTGTGAGTTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTTTGAAGATGGAATGAATTATGTTTTCTTTTCTGTGAGTTTAT  933

seq1  GTCTTGTAAGCTCATAATTTGGATAGTAGTGTCTTTTTTTTCTTTTTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTAAGCTCATAATTTGGATAGTAGTGTCTTTTTTTTCTTTTTTAA  983

seq1  TAATAGTTCTAGAAATTACTAAAGTACCAAGGCTGTCTGTGCAAAGGGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTTCTAGAAATTACTAAAGTACCAAGGCTGTCTGTGCAAAGGGAG  1033

seq1  ACCCATATCTTCTGGCTTTCAGTAATGCAGAATTTAATAAGCTATCACTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATATCTTCTGGCTTTCAGTAATGCAGAATTTAATAAGCTATCACTT  1083

seq1  CCTTGACCTCAAAGTTATAGGAATTC  1126
      ||||||||||||||||||||||||||
seq2  CCTTGACCTCAAAGTTATAGGAATTC  1109

seq1: chr10_39524620_39525070
seq2: B6Ng01-001H10.g_70_520

seq1  GAATTCATTTAATATTCTCAGGTTTTCTCATTACTGCCAAAGTGTGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAATATTCTCAGGTTTTCTCATTACTGCCAAAGTGTGAATT  50

seq1  CCTGCATAAGAAAAATCTCAGATCCCAGCAACAACAACTTGGGAAGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATAAGAAAAATCTCAGATCCCAGCAACAACAACTTGGGAAGTTTG  100

seq1  TACTAATTACTATATTTGTTGACATTCTTTCTTTACAGTTCTTTATTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTACTATATTTGTTGACATTCTTTCTTTACAGTTCTTTATTGTT  150

seq1  GGAAGGTGTTGAACCCCTGAGTACATGTGAACTAGAAGTGGATGCCGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGTTGAACCCCTGAGTACATGTGAACTAGAAGTGGATGCCGTAG  200

seq1  CTGCTGACATCTTAAATAGGCTGGACATTGAGGGTATGCGCATGATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACATCTTAAATAGGCTGGACATTGAGGGTATGCGCATGATTATT  250

seq1  CCTGATATGCATTGTTACTCACAAAATGTAATGAGAAAGCAGAGCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATATGCATTGTTACTCACAAAATGTAATGAGAAAGCAGAGCAGAGG  300

seq1  TGTTACCAGAGAAGTGAGATACGGAAGGAGAAGGCAAGGTTTACCTGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCAGAGAAGTGAGATACGGAAGGAGAAGGCAAGGTTTACCTGCGG  350

seq1  GTTATATACCATGGACAGAAGTTTAGACTCATTTCTCATCAGTGTTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATACCATGGACAGAAGTTTAGACTCATTTCTCATCAGTGTTTGAA  400

seq1  TTTTACTTAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  450

seq1  T  451
      |
seq2  T  451