BAC Information

Click to search

BAC

Clone NameB6Ng01-001I21
Chromosome10 (Build37)
Map Location 104,053,516 - 104,054,363
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001I21.bB6Ng01-001I21.g
ACCDH839842DH839843
length1,0181,172
definitionDH839842|Mus musculus domesticus DNA, BAC clone: B6Ng01-001I21, 5' end.DH839843|Mus musculus domesticus DNA, BAC clone: B6Ng01-001I21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatagatgctggtgaggatgtggagaaagaggaacatgcctccattgtt
agtgggattgcaagcttgtacaaccactctggaaatcagtctggcggttc
ctcagaaaaatggacatagtactaccagaggatccagcaatacctctcct
gggcatatatccagaagatgtcccaaccggtaagaaggacacatgctcca
ctatgttcatagcagccttatttttaatagccagaagctggaaagaaccc
agatgcccctcaacagaggaatggataccaaaaaatgtggtacatttaca
cagtggagtactactcagctagtaaaaaggatgaatttatgaaattccta
ggcaaatggatggacctggagggcatcatcctgagtgaggtaacacaatc
acaaaagaactcaaatgatatgtactcactgataagtggatattagccca
gaaacttagtatagtgagatataagatacaatttgcaaaacacatgaaac
tgaagaagaacaaagaccaaagtgtggacactttgccccttcttagaatt
ggaaacaatcacccatggaaggagttacagagacaaagtttggagctgag
acaaaaggatggaccatctagagactgccatatccaatgatccatcccat
aattagcctccaaacgatatatgtcttttttaatggtacttttttcttaa
ttttttaaacaaaacatcacttctatgtgtatagtattaaatatgattcc
atttgtttcaatgttatcactaagatctctaagcattttgttgagttcca
atttaatattgaaatttattagcctgtgtaatttaatatcaaaaacctcc
taactgggtctttgtgga

gaattccaagaaagtctttaatttctttctttatttctttgtaaccaaga
tattattcagtagagagttgttcagtttccatggatatgtggtttttcta
ttgtttttgttgttattgaaatctaaccttagtctgtgtggatccaaaag
gatgcaggggattatttcaatcttcgtgtatctgttgaggcttggtatgt
gaccgattatatggtcaattttgaataaggtaggaaacagtcaaactcag
ggctgaagtcaaccaaactgaaacaaatagagggatacaaagaatcaaga
aaaccaaaagctgattctttgagaaaatcatcaagatagataagccctta
gccaaactaattaaagggcccagaggcaatatccaaattaacaaaatcag
aaataaaagggagacataacaaaagaaactgagaaaattcaaaaacaatc
atcaaatcctactacaaaagcatatactcaacaaatctaaaaaatctgga
tgaaatcgataattatctaggcagataccatgcaccaaatttacaccaag
agcaggtacactatctaaacagtcccacatcacctaagaaaatagaaaaa
tcattaaaaacctcctaaccaaaaaagcttagggctaggtggcagaattc
taacagtccttaaaagaagagttaatagcaacactcctaaaattattcca
taaaataggaacagaagatacacaacctaattcatttgatgaagtcacaa
ttactcttatttacttacacaaataccttaaccatgcaaataagaacttc
tgactgattttgcttatgaatatctatgtaaaaaatacacaataaatttc
tagcaaagctaatccaagaacacttcaaaatgatcattcaccatgaccaa
gtatgcttcattccagggatgcaaggttggttcaatgtatgaaaattcat
taacattatccactatataaacaaatttaaagaaaaatcacatgatcatc
tcattagatgctgaaaaagcattgaaaaaaatacaacactctcatgttaa
aatcttgtaagatcagatcagtcatactatataataaagcaatatgcagc
agtgccgaacaaattcaataatgatgatacttgacatcctactaagcacg
acagagacaaggaatatcccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053516_104054363
seq2: B6Ng01-001I21.b_49_688 (reverse)

seq1  TTTAGCAAATTGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAAT  50
      ||| ||||||||||||||||||| |   ||| ||||||||||||||||||
seq2  TTTTGCAAATTGTATCTTATATC-TCACTATACTAAGTTTCTGGGCTAAT  49

seq1  ATCCACTTATCAGTGAGTACATATTGCGCGAGTTCCTTTGTGATTGGGTT  100
      ||||||||||||||||||||||||     |||||| |||||||||| |||
seq2  ATCCACTTATCAGTGAGTACATATCATTTGAGTTCTTTTGTGATTGTGTT  99

seq1  ACCGCACTCAGGATGATACTCTCCAGGTCCATCCATTTGCCTAGGAATTT  150
      ||| ||||||||||||| | ||||||||||||||||||||||||||||||
seq2  ACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTT  149

seq1  CATAAATTCATTCTTTTTAATAGCTCCATTTACATTTAATTTAATTAATG  200
      ||||||||||| ||||||| ||||                          
seq2  CATAAATTCATCCTTTTTACTAGC--------------------------  173

seq1  TAATTACAATTAATTAATTTATTAATTAAATAATTTAATAATTTAATTGA  250
                                                        
seq2  --------------------------------------------------  173

seq1  TAAATTAATTTAATTAATTAATTTAATTAATTAAATTAAATAATAATTTA  300
                                                        
seq2  --------------------------------------------------  173

seq1  ATAATAAATTAAATATTTTAAAATTAATAATAATTTTATAAGTAAATAAT  350
                                            | ||||      
seq2  --------------------------------------TGAGTA------  179

seq1  TTAATTAATGTAATTTAATTAATGTAATTACATTACATTTAATAGCTCCA  400
                             |||                   |||||
seq2  -----------------------GTA-------------------CTCCA  187

seq1  TTGTGTAAATGTACCACATTTTCT-GTATCTATTCCTCTGTTGAGGGGCA  449
       ||||||||||||||||||||| | ||||| |||||||||||||||||||
seq2  CTGTGTAAATGTACCACATTTTTTGGTATCCATTCCTCTGTTGAGGGGCA  237

seq1  TCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATA  499
      |||||||||||||||||| |||||||||| |||||||||||||||||| |
seq2  TCTGGGTTCTTTCCAGCTTCTGGCTATTAAAAATAAGGCTGCTATGAACA  287

seq1  TAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATG  549
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGTGGAGCATGTGTCCTTCTTACCGGTTGGGACATCTTCTGGATATATG  337

seq1  CCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCT  599
      ||||| |||||||||||||||||||| |||||||||||||||| ||||||
seq2  CCCAGGAGAGGTATTGCTGGATCCTCTGGTAGTACTATGTCCATTTTTCT  387

seq1  GACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCC  649
      || |||||||||||| |||||||||||||||||||||||| |||||||||
seq2  GAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCC  437

seq1  ACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGC----A  695
      || |||||||||||  ||||||||||||||||||||||| |||||    |
seq2  ACTAACAATGGAGGCATGTTCCTCTTTCTCCACATCCTCACCAGCATCTA  487

seq1  TCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGT  745
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGAT  537

seq1  GGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTT  795
      ||||||||||||||||||||||||||||||| |||||||||||||||| |
seq2  GGAATCTCAGGGTTGTTTTGATTTGCATTTCTCTGATGATTAAGGATGCT  587

seq1  GAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAA  845
      || |||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  GAGCATTTTTTCAGGTGCTTCTCAGCCATTCAGTATTCCTCAGGTGAGAA  637

seq1  TTC  848
      |||
seq2  TTC  640


| Home | SequenceCutter | Blast | Download |