BAC Information

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BAC

Clone NameB6Ng01-001P22
Chromosome10 (Build37)10 (Build37)
Map Location 52,813,297 - 52,814,533104,053,596 - 104,054,363
singlet/doubletsingletsinglet
Overlap geneSlc35f1
Upstream geneRos1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa
Downstream genePln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001P22.bB6Ng01-001P22.g
ACCDH840151DH840152
length1,218977
definitionDH840151|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P22, 5' end.DH840152|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,813,297 - 52,814,533)(104,053,596 - 104,054,363)
sequence
gaattccatgacagccagggctacacagagaaaccctgtctcaaaaaacc
caaaacccaaaacccaaaacccaaaacccaaaacccaaaacccaaaaccc
aaaacccaaaactcaaaaccaaaaagccaaaaaccaaaaactaaaaacca
aaaaccaaaaaccaaaaaccaaaaaccgaaaaccaaaaacaaaacaaaca
aacaaacaaaaaaatattgaatgtggggaattcttctttctgtctggaac
ttaaactaggaaacagcttccacaattccctttgatcagttcaaggtttg
ttaatattgccctagattgggagtatttagaggaatttgcctttagatgg
atttcctaataaggtactgacttcacagttttgataacatatcctagaat
tcgatagagaaaaattaataccataaacttctagtttctctcaagcattc
cacttaggtcattaggtcacatggctcttcacagagaacatcaggaagcg
acacgtgaccgtgtttgaagaacagcactctagaattataagatctccat
aaatccttatttgtactctaaacgtgtttaccatccaaatattcactact
aaacagacaaataaatatcttttaaaatgatgtatccaagaaagtgactt
caactgttctgtgtaatgtgattagggcccatgttgtagagtttcttctg
ttctcattagaaaacattcggaatatttttgtctaatccttgtatgaggc
aacttatcctgtggtctccaggagttataaagctattagaaaattctctt
aataattgcctatgctgatacccaaggttagattccctcaagatcacgga
cagagctctgtgacagttgaccctccattctgctactagtgttacagccc
tcatgttagaatgagaattctctttttactgttgctgtaagagatttggc
atgtaaaatttaataacttctgagcatgattcatattaatgacatatatc
acgctttaaacttgacacaacttcatcccacaaatattatcctgtgctac
tatgtgcaggcacttcattgtcacgtgcttctattacaagcagtcaggag
ggctgaaagtcacagagattattcaagatgagatctacccagaaacctaa
acagacagcattcaatgtccttagcatctgagatccacgccggataggtg
ccgtaatgggaacctttt
gaattctcacctgaggaatattgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgaaat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgtggatgcggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctagaaatcagtctagcagttcctca
gaaaataggacatagtactataggaggatcccacaatacctctccttggc
atatatccagaagatgttccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaggaatgaatttataaaattcctaggcaa
atggatggacctggagggcttcatcctgaatgaggcaacccaatcacgaa
agaactcacatgatatttactcactgataagtgcatgttagcccagaaac
ttagaatacccaagatataagatataacttgcaaagcacatgaaactgaa
gaagaatgaagaccaaagtgtggacactttgccccttcttagaattggga
aacaaaacagccatggatggagttacagagacaaagtttggagctgagac
aaaaaaggatggaccatctagagattgccatacctggggatccatcccat
aatcagcttccaaacgctgacaccattgcacacaccacccatgccagaga
tacatgacagaagccatctcatcctagtgtctttgctagcctagcttgga
ttctgccacgcttgcaaaagaaattgccttgccaagcaactttaattttg
ctcatgtgttcctctttgtgatactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_52813297_52814533
seq2: B6Ng01-001P22.b_47_1264

seq1  GAATTCCATGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACC  50

seq1  CAAAACCCAAAACCCAAAACCCAAAACCCAAAACCCAAAACCCAAAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCAAAACCCAAAACCCAAAACCCAAAACCCAAAACCCAAAACCC  100

seq1  AAAACCCAAAACTCAAAACCAAAAAGCCAAAAACCAAAAACTAAAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAAAACTCAAAACCAAAAAGCCAAAAACCAAAAACTAAAAACCA  150

seq1  AAAACCAAAAACCAAAAACCAAAAACCGAAAACCAAAAACAAAACAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAAACCAAAAACCAAAAACCGAAAACCAAAAACAAAACAAACA  200

seq1  AACAAACAAAAAAATATTGAATGTGGGGAATTCTTCTTTCTGTCTGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAAAATATTGAATGTGGGGAATTCTTCTTTCTGTCTGGAAC  250

seq1  TTAAACTAGGAAACAGCTTCCACAATTCCCTTTGATCAGTTCAAGGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTAGGAAACAGCTTCCACAATTCCCTTTGATCAGTTCAAGGTTTG  300

seq1  TTAATATTGCCCTAGATTGGGAGTATTTAGAGGAATTTGCCTTTAGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTGCCCTAGATTGGGAGTATTTAGAGGAATTTGCCTTTAGATGG  350

seq1  ATTTCCTAATAAGGTACTGACTTCACAGTTTTGATAACATATCCTAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAATAAGGTACTGACTTCACAGTTTTGATAACATATCCTAGAAT  400

seq1  TCGATAGAGAAAAATTAATACCATAAACTTCTAGTTTCTCTCAAGCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATAGAGAAAAATTAATACCATAAACTTCTAGTTTCTCTCAAGCATTC  450

seq1  CACTTAGGTCATTAGGTCACATGGCTCTTCACAGAGAACATCAGGAAGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGGTCATTAGGTCACATGGCTCTTCACAGAGAACATCAGGAAGCG  500

seq1  ACACGTGACCGTGTTTGAAGAACAGCACTCTAGAATTATAAGATCTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGACCGTGTTTGAAGAACAGCACTCTAGAATTATAAGATCTCCAT  550

seq1  AAATCCTTATTTGTACTCTAAACGTGTTTACCATCCAAATATTCACTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTATTTGTACTCTAAACGTGTTTACCATCCAAATATTCACTACT  600

seq1  AAACAGACAAATAAATATCTTTTAAAATGATGTATCCAAGAAAGTGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACAAATAAATATCTTTTAAAATGATGTATCCAAGAAAGTGACTT  650

seq1  CAACTGTTCTGTGTAATGTGATTAGGGCCCATGTTGTAGAGTTTCTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTTCTGTGTAATGTGATTAGGGCCCATGTTGTAGAGTTTCTTCTG  700

seq1  TTCTCATTAGAAAACATTCGGAATATTTTTGTCTAATCCTTGTATGAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTAGAAAACATTCGGAATATTTTTGTCTAATCCTTGTATGAGGC  750

seq1  AACTTATCCTGTGGTCTCCAGGAGTTATAAAGCTATTAGAAAATTCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATCCTGTGGTCTCCAGGAGTTATAAAGCTATTAGAAAATTCTCTT  800

seq1  AATAATTGCCTATGCTGATACCCAAGGTTAGATTCCCTCAAGATCACGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGCCTATGCTGATACCCAAGGTTAGATTCCCTCAAGATCACGGA  850

seq1  CAGAGCTCTGTGACAGTTGACCCTCCATTCTGCTACTAGTGTTACAGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCTGTGACAGTTGACCCTCCATTCTGCTACTAGTGTTACAGCCC  900

seq1  CCATGTTAGAATGAGAATTCTC-TTTTACTGTTGCTGTAAGAGATTTGGC  949
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCATGTTAGAATGAGAATTCTCTTTTTACTGTTGCTGTAAGAGATTTGGC  950

seq1  ATGTAAAATTTAATAAC-TCTGAGCATGATTCATATTAATGACATATTAT  998
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  ATGTAAAATTTAATAACTTCTGAGCATGATTCATATTAATGACATA-TAT  999

seq1  CACGCTTTAAACTTGACACAACTTCATCCCACAAATATTTATCCTGTGCC  1048
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  CACGCTTTAAACTTGACACAACTTCATCCCACAAATA-TTATCCTGTG-C  1047

seq1  TACTATGTGCAGGCACTTCATTGTCACGTGCCTTCCTATTACAAAGCAGT  1098
      |||||||||||||||||||||||||||||||  | ||||||| |||||||
seq2  TACTATGTGCAGGCACTTCATTGTCACGTGC--TTCTATTAC-AAGCAGT  1094

seq1  CAGGAGTGCTGAAAAGTCACAGGAAGATTAATTCAAAAGATGAGATTCTA  1148
      |||||| |||| ||||||||||  ||||| ||||  ||||||||| ||||
seq2  CAGGAGGGCTG-AAAGTCACAG--AGATT-ATTC--AAGATGAGA-TCTA  1137

seq1  AACCCCAGAAACTTAAACAGACCAGCAATTTCAAATGCTCTTAGCATCTG  1198
         ||||||||| |||||||| |||||  ||| ||||  |||||||||||
seq2  ---CCCAGAAACCTAAACAGA-CAGCA--TTC-AATGTCCTTAGCATCTG  1180

seq1  AGTACCCACGCCAGATAGTTTGCAGTAATGGG-ACCTTTT  1237
      || | ||||||| |||||  ||| |||||||| |||||||
seq2  AG-ATCCACGCCGGATAG-GTGCCGTAATGGGAACCTTTT  1218

seq1: chr10_104053596_104054363
seq2: B6Ng01-001P22.g_66_621 (reverse)

seq1  AGTTCCTTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCC  50
      ||||| || ||||||||||| || || |||||||||  | ||||||||||
seq2  AGTTCTTTCGTGATTGGGTTGCCTCATTCAGGATGAAGCCCTCCAGGTCC  50

seq1  ATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATT  100
      |||||||||||||||||||| |||||||||||| ||||||||||      
seq2  ATCCATTTGCCTAGGAATTTTATAAATTCATTCCTTTTAATAGC------  94

seq1  TACATTTAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAAA  150
                                                        
seq2  --------------------------------------------------  94

seq1  TAATTTAATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTAA  200
                                                        
seq2  --------------------------------------------------  94

seq1  TTAAATTAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATAA  250
                                                        
seq2  --------------------------------------------------  94

seq1  TAATTTTATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATTA  300
              | ||||                             |||    
seq2  --------TGAGTA-----------------------------GTA----  103

seq1  CATTACATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCT  350
                     |||||||||||||||||||||||||||||||||| 
seq2  ---------------CTCCATTGTGTAAATGTACCACATTTTCTGTATCC  138

seq1  ATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATA  400
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATA  188

seq1  AATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGG  450
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  AATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGG  238

seq1  GGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTA  500
        ||||||||||||||||||| || ||||||||||  |||||||||  ||
seq2  AACATCTTCTGGATATATGCCAAGGAGAGGTATTGTGGGATCCTCCTATA  288

seq1  GTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGT  550
      ||||||||||| ||||||||| |||| || |||| |||||| ||||||||
seq2  GTACTATGTCCTATTTTCTGAGGAACTGCTAGACTGATTTCTAGAGTGGT  338

seq1  TGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCC  600
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCC  388

seq1  ACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTC  650
       ||||| | |||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCACACCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTC  438

seq1  TGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTG  700
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  TGACTGGTGTGAGATGGAATTTCAGGGTTGTTTTGATTTGCATTTCCCTG  488

seq1  ATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTA  750
      ||||||||||||| |||||||||||||||||||||||| |||||||  ||
seq2  ATGATTAAGGATGCTGAACATTTTTTCAGGTGCTTCTCAGCCATTCAATA  538

seq1  TTCCTCAGGTGAGAATTC  768
      ||||||||||||||||||
seq2  TTCCTCAGGTGAGAATTC  556