BAC Information

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BAC

Clone NameB6Ng01-002F06
Chromosome10 (Build37)
Map Location 56,265,002 - 56,408,996
singlet/doubletdoublet
Overlap geneLOC100042622
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347
Downstream geneLOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002F06.bB6Ng01-002F06.g
ACCDH840388DH840389
length3231,084
definitionDH840388|Mus musculus domesticus DNA, BAC clone: B6Ng01-002F06, 5' end.DH840389|Mus musculus domesticus DNA, BAC clone: B6Ng01-002F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,265,002 - 56,265,324)(56,407,897 - 56,408,996)
sequence
gaattctcagccctaaggaaaaagtctggcttagctctctgtgttttcat
cactagcactggcaagtagaaaacagacaaacagagacaaactgctcctg
ggagctcactggctgacaaacctagctgaagtgggcttctagttcagtga
cagaccctgcctcaaggcaagatgggtgagaatcataaagatacttcatg
tgtgctctggcttccaaataggcacacagggctacacaaacctgtataat
cacatgcatggactacacagacacagacacactgagagagagagaggggg
agagagagggagagagagagaga
gaattcttgcctttttgctgcctagaggctttgcccagactccagagtga
gggaattttctctgctttacatcccaaagattctttagttttataccctg
cctcgttaccaacaatcatgcggctactagaatgcaccactacaaaggaa
tacttaggtcaaaactcaatttaacatggatgaaatatacacactgaaat
ctatagagcatgaccatataaatcaaaagacctcggcaaatggggatatc
attcattggaagaccacagtcatccatacaccggcatgttaaacaatacc
attttaagggaaatttcagaaagatgctttgtagctatgaacaaaattat
ttcaaatttatattaaaagcaaaggaactagagttgtaaccataaatttc
cagagatttttcattgaggagaaagaagccaatttcaactaataactgag
ctttctggttccatttatattgcttgttgaagcaatgctacagacccaaa
gaatttattagtggtgaaagaaagcaaagaattagagaggagaaaaatac
ttggtttataaataggcaatatgacaaatcctgtggtgatggaaatggcc
atctcttgcttgtgttaatgtctatatatctgtgacatagtgacccagtt
ataagtggcattaatgttaaggtgaattgcatgactaatactgttccttg
caactacatgtggatctgcaattttctcatttaatttttaaagtagtgtg
tgaaacaaaaaagaaagacaaagattagtttaatccatccaggggtcatg
tttaattctcaagtacaaataattctcatgtgtaccttatttaaagcttt
atagtttacagaataaagcaatagtttctcaagtcatcttttgaggtaga
ataaatccactacaaacacttgaaagaaataaaaataacatgaaaccgga
atgctaccactcatgatatacacattttaaaataaataccaggaacactg
attacttccacaatgctacattagtttagaagtaagaactaatctgtgcc
ttatgcattaatatatcaagaataatagtcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_56265002_56265324
seq2: B6Ng01-002F06.b_45_367

seq1  GAATTCTCAGCCCTAAGGAAAAAGTCTGGCTTAGCTCTCTGTGTTTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCCCTAAGGAAAAAGTCTGGCTTAGCTCTCTGTGTTTTCAT  50

seq1  CACTAGCACTGGCAAGTAGAAAACAGACAAACAGAGACAAACTGCTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCACTGGCAAGTAGAAAACAGACAAACAGAGACAAACTGCTCCTG  100

seq1  GGAGCTCACTGGCTGACAAACCTAGCTGAAGTGGGCTTCTAGTTCAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCACTGGCTGACAAACCTAGCTGAAGTGGGCTTCTAGTTCAGTGA  150

seq1  CAGACCCTGCCTCAAGGCAAGATGGGTGAGAATCATAAAGATACTTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCTGCCTCAAGGCAAGATGGGTGAGAATCATAAAGATACTTCATG  200

seq1  TGTGCTCTGGCTTCCAAATAGGCACACAGGGCTACACAAACTTGTATAAT  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTGCTCTGGCTTCCAAATAGGCACACAGGGCTACACAAACCTGTATAAT  250

seq1  CACATGCATGGACTACACAGACACAGACACACTGAGAGAGAGAGAGGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCATGGACTACACAGACACAGACACACTGAGAGAGAGAGAGGGGG  300

seq1  AGAGAGAGGGAGAGAGAGAGAGA  323
      |||||||||||||||||||||||
seq2  AGAGAGAGGGAGAGAGAGAGAGA  323

seq1: chr10_56407897_56408996
seq2: B6Ng01-002F06.g_69_1152 (reverse)

seq1  AGATGACTATTATTCTTTGATATATTAATGCAATAAAGGGCACAGATTAG  50
      ||||||||||||||| ||||||||||||||| ||||  ||||||||||||
seq2  AGATGACTATTATTC-TTGATATATTAATGC-ATAA--GGCACAGATTAG  46

seq1  TTTCTTAACTCTAAACTATTGTAGCATTTGTGGAAGTAATCAGTGTTTCC  100
       ||||||  ||||||||| ||||||| |||||||||||||||||| ||||
seq2  -TTCTTACTTCTAAACTAATGTAGCA-TTGTGGAAGTAATCAGTG-TTCC  93

seq1  TGGTATTTTATTTTAAAATGTGGTATTATTCATGAGTGGTAGCATTCCGG  150
      ||||| ||||||||||||||| ||||   |||||||||||||||||||||
seq2  TGGTA-TTTATTTTAAAATGT-GTAT--ATCATGAGTGGTAGCATTCCGG  139

seq1  TTTTCATTGTTTATTTTTATTTCTTTCAAGTGTTTGTAGTGGATTTATTC  200
       ||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  -TTTCAT--GTTATTTTTATTTCTTTCAAGTGTTTGTAGTGGATTTATTC  186

seq1  TACCTTCAAAAGATGACTTGAGAAACTATTGCTTTAATTCTGTAAACTAT  250
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  TACC-TCAAAAGATGACTTGAGAAACTATTGCTTT-ATTCTGTAAACTAT  234

seq1  AAAGCTTTAAATAAGGTACACATGAGAATTATTTGTACTTGAGAATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTAAATAAGGTACACATGAGAATTATTTGTACTTGAGAATTAAA  284

seq1  CATGACCCCTGGATGGATTAAACTAATCTTTGTCTTTCTTTTTTGTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCCCTGGATGGATTAAACTAATCTTTGTCTTTCTTTTTTGTTTCA  334

seq1  CACACTACTTTAAAAATTAAATGAGAAAATTGCAGATCCACATGTAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTACTTTAAAAATTAAATGAGAAAATTGCAGATCCACATGTAGTTG  384

seq1  CAAGGAACAGTATTAGTCATGCAATTCACCTTAACATTAATGCCACTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACAGTATTAGTCATGCAATTCACCTTAACATTAATGCCACTTAT  434

seq1  AACTGGGTCACTATGTCACAGATATATAGACATTAACACAAGCAAGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGTCACTATGTCACAGATATATAGACATTAACACAAGCAAGAGAT  484

seq1  GGCCATTTCCATCACCACAGGATTTGTCATATTGCCTATTTATAAACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTTCCATCACCACAGGATTTGTCATATTGCCTATTTATAAACCAA  534

seq1  GTATTTTTCTCCTCTCTAATTCTTTGCTTTCTTTCACCACTAATAAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTCTCCTCTCTAATTCTTTGCTTTCTTTCACCACTAATAAATTC  584

seq1  TTTGGGTCTGTAGCATTGCTTCAACAAGCAATATAAATGGAACCAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCTGTAGCATTGCTTCAACAAGCAATATAAATGGAACCAGAAAG  634

seq1  CTCAGTTATTAGTTGAAATTGGCTTCTTTCTCCTCAATGAAAAATCTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTATTAGTTGAAATTGGCTTCTTTCTCCTCAATGAAAAATCTCTG  684

seq1  GAAATTTATGGTTACAACTCTAGTTCCTTTGCTTTTAATATAAATTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTATGGTTACAACTCTAGTTCCTTTGCTTTTAATATAAATTTGAA  734

seq1  ATAATTTTGTTCATAGCTACAAAGCATCTTTCTGAAATTTCCCTTAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTGTTCATAGCTACAAAGCATCTTTCTGAAATTTCCCTTAAAAT  784

seq1  GGTATTGTTTAACATGCCGGTGTATGGATGACTGTGGTCTTCCAATGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGTTTAACATGCCGGTGTATGGATGACTGTGGTCTTCCAATGAAT  834

seq1  GATATCCCCATTTGCCGAGGTCTTTTGATTTATATGGTCATGCTCTATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCCCCATTTGCCGAGGTCTTTTGATTTATATGGTCATGCTCTATAG  884

seq1  ATTTCAGTGTGTATATTTCATCCATGTTAAATTGAGTTTTGACCTAAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTGTGTATATTTCATCCATGTTAAATTGAGTTTTGACCTAAGTA  934

seq1  TTCCTTTGTAGTGGTGCATTCTAGTAGCCGCATGATTGTTGGTAACGAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGTAGTGGTGCATTCTAGTAGCCGCATGATTGTTGGTAACGAGG  984

seq1  CAGGGTATAAAACTAAAGAATCTTTGGGATGTAAAGCAGAGAAAATTCCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTATAAAACTAAAGAATCTTTGGGATGTAAAGCAGAGAAAATTCCC  1034

seq1  TCACTCTGGAGTCTGGGCAAAGCCTCTAGGCAGCAAAAAGGCAAGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGGAGTCTGGGCAAAGCCTCTAGGCAGCAAAAAGGCAAGAATTC  1084