BAC Information

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BAC

Clone NameB6Ng01-002M10
Chromosome10 (Build37)
Map Location 17,912,395 - 18,072,207
singlet/doubletdoublet
Overlap geneLOC100039660, Ccdc28a, LOC627646
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1
Downstream geneNhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5, EG637620
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002M10.bB6Ng01-002M10.g
ACCDH840696DH840697
length1,1251,142
definitionDH840696|Mus musculus domesticus DNA, BAC clone: B6Ng01-002M10, 5' end.DH840697|Mus musculus domesticus DNA, BAC clone: B6Ng01-002M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,912,395 - 17,913,529)(18,071,052 - 18,072,207)
sequence
gaattcaatccaatcctgagatgccttcaaccttcaggcccctgggtgtg
cagtaatcagcaatactcgggcatttaataccagagtgggattgtgggca
gagaaaagagaaacaacagaatggctctggtgggaaggtaatgaagtatg
taaagcctcggtggaaatggagaagagacaagggacgatttccgtagcag
aattttccctgtcctatcactgtatatattagtacaacaagaagcctgtg
attggacatggaaaagagacataagagttgcagagacagagaaggaggag
acaggtagaggaaggaaggaagatggagcaggaggaagacgatccagatt
ctgtgtggctttaagtagccacaggtagctgtgactataagaggaggata
gaataactggggtaatttgtctaatctaggtggaccgcttgtatcattaa
ttgtctctgaaattactgtgtgggcatcttgtgaattgagaatgtattga
tatataaatctgactgattcattataagattctagagttttgatttactg
ggttactggaatttgggaccatcagccacaggggtttatggctgagaagg
tacaggaggctaggaggctggcaaactgaagaagggaagactgcctagct
agaggcggctcgagaccacagggcggagagtagctgggtgtagctcggga
acttgccattcttttaaatatttcccacaacagtttcctgccttccacat
caatcacactctcctgtacactggagatgtactgcggctagctctcgaca
taagagcagtttagacaaacaaggtaccgtagtgataacatcacgtgtgt
ggtggttctacgtgattcaggagactttaaacacaatagaactgagccac
tgagaatgtagggactgagactttcatgcaagatctgcttacacgtcact
ggtctccaccttcttcccctacacgacagcttcaggagtctggtttccct
ttgctttaacttaaccatttcttgtttgggagagcctagaagagatgctc
atgggttagggcttctgatgcttttacaagggacaggctctgtttccagc
acttacgtggtgactcacaaatgcc
gaattcaaaacacaactgaagccccacagcctgtgccttcccgccaagga
gcaacgggagcgacatcttcatggtacttctcgcgcagtgtctatgcacc
cacgcctctgggatggcgttcttcctatttcctctaacatttagtcaatc
caggctgtgatggctaagatttcaatgatctatcaaagtagctggagcac
agaaaactccaggctaacatttcttctcacttttgaatgttaatgtacct
tataaagttcaccacatggggggaaaggttataataaaagtggctgtccc
ttggaattttaaagagaaatatatagaagttaagtgacaacacagaaaac
aaaatatttatgttccccaagaccccttggtttattggtatggtggaact
acttcaaatcacccacacatcttcaaaattctaaaaatcatgtaatgaca
tttaagcaaaacaaagcaaaaaaaaatgttgagcagaagaacattggaac
ttcaattctttctcgtggacctgctttcattccatttatttgtggcagga
aatagaaataaagactaaaacccaaatgtcctttaagctacaggggaaat
ggagcaaaccagaggctacagagtaccttgaataatcgaaaggacacaaa
tttattcctagaataaccctatttaagagagagagagagagagagaaatc
ttgaaataaatggtgactcttccattaagtaagtgtatcttttagggaac
agagccttccttggttggagagatggctccacggtaaagcctgaggaacg
gagtctggtccctaagacacactgggaaagacgaagagaatcagctcctg
caagcgctgtctctgtgcactgtgacacacaggcatatacccagactcag
agatacacagtacaaatggggagaaagaaacccagccaacatttcctgag
aaaaaaggagactaaacatggtaactctagccagtcactttccttctgga
aaattcctggattatcatcacatgacattacagctgcagctgattacatc
gttatgagagaaaaaaaaacatttatccactgtaattattattcttctga
gaccactaaaatacaaaggaagctgtgacatgacccatggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_17912395_17913529
seq2: B6Ng01-002M10.b_46_1170

seq1  GAATTCAATCCAATCCTGAGATGCCTTCAACCTTCAGGCCCCTGGGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCAATCCTGAGATGCCTTCAACCTTCAGGCCCCTGGGTGTG  50

seq1  CAGTAATCAGCAATACTCGGGCATTTAATACCAGAGTGGGATTGTGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATCAGCAATACTCGGGCATTTAATACCAGAGTGGGATTGTGGGCA  100

seq1  GAGAAAAGAGAAACAACAGAATGGCTCTGGTGGGAAGGTAATGAAGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGAGAAACAACAGAATGGCTCTGGTGGGAAGGTAATGAAGTATG  150

seq1  TAAAGCCTCGGTGGAAATGGAGAAGAGACAAGGGACGATTTCCGTAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCTCGGTGGAAATGGAGAAGAGACAAGGGACGATTTCCGTAGCAG  200

seq1  AATTTTCCCTGTCCTATCACTGTATATATTAGTACAACAAGAAGCCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCCTGTCCTATCACTGTATATATTAGTACAACAAGAAGCCTGTG  250

seq1  ATTGGACATGGAAAAGAGACATAAGAGTTGCAGAGACAGAGAAGGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACATGGAAAAGAGACATAAGAGTTGCAGAGACAGAGAAGGAGGAG  300

seq1  ACAGGTAGAGGAAGGAAGGAAGATGGAGCAGGAGGAAGACGATCCAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGAGGAAGGAAGGAAGATGGAGCAGGAGGAAGACGATCCAGATT  350

seq1  CTGTGTGGCTTTAAGTAGCCACAGGTAGCTGTGACTATAAGAGGAGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGCTTTAAGTAGCCACAGGTAGCTGTGACTATAAGAGGAGGATA  400

seq1  GAATAACTGGGGTAATTTGTCTAATCTAGGTGGACCGCTTGTATCATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACTGGGGTAATTTGTCTAATCTAGGTGGACCGCTTGTATCATTAA  450

seq1  TTGTCTCTGAAATTACTGTGTGGGCATCTTGTGAATTGAGAATGTATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTGAAATTACTGTGTGGGCATCTTGTGAATTGAGAATGTATTGA  500

seq1  TATATAAATCTGACTGATTCATTATAAGATTCTAGAGTTTTGATTTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAATCTGACTGATTCATTATAAGATTCTAGAGTTTTGATTTACTG  550

seq1  GGTTACTGGAATTTGGGACCATCAGCCACAGGGGTTTATGGCTGAGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTGGAATTTGGGACCATCAGCCACAGGGGTTTATGGCTGAGAAGG  600

seq1  TACAGGAGGCTAGGAGGCTGGCAAACTGAAGAAGGGAAGACTGCCTAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGGCTAGGAGGCTGGCAAACTGAAGAAGGGAAGACTGCCTAGCT  650

seq1  AGAGGCGGCTCGAGACCACAGGGCGGAGAGTAGCTGGGTGTAGCTCGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCGGCTCGAGACCACAGGGCGGAGAGTAGCTGGGTGTAGCTCGGGA  700

seq1  ACTTGCCATTCTTTTAAATATTTCCCACAACAGTTTCCTGCCTTCCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCATTCTTTTAAATATTTCCCACAACAGTTTCCTGCCTTCCACAT  750

seq1  CAATCACACTCTCCTGTACACTGGAGATGTACTGCGGCTAGCTCTCGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACACTCTCCTGTACACTGGAGATGTACTGCGGCTAGCTCTCGACA  800

seq1  TAAGAGCAGTTTAGACAAACAAGGTACCGTAGGTGATAACATCACGTGTG  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAAGAGCAGTTTAGACAAACAAGGTACCGTA-GTGATAACATCACGTGTG  849

seq1  TGGTGGTTCTACGTGATTCAGGGAGACTTTAAACACAATAGAACTGAGCC  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGGTGGTTCTACGTGATTCA-GGAGACTTTAAACACAATAGAACTGAGCC  898

seq1  ACTGAGAATGTAGGGACTGAGAACTTCCATGCAAGACTTGCTTAACACGT  950
      ||||||||||||||||||||| |||| |||||||||  ||||| ||||||
seq2  ACTGAGAATGTAGGGACTGAG-ACTTTCATGCAAGATCTGCTT-ACACGT  946

seq1  CCACTGGTCTCCACC-TCTCCCCCTACACGACAGCTTCAGGAGTCTGGTT  999
       |||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  -CACTGGTCTCCACCTTCTTCCCCTACACGACAGCTTCAGGAGTCTGGTT  995

seq1  TCCCCTTTGCTTTTAAACTTAACCATTTCTTGTTTGGGAGGAGCCTAG-A  1048
      | |||||||||||  |||||||||||||||||||||||| |||||||| |
seq2  T-CCCTTTGCTTT--AACTTAACCATTTCTTGTTTGGGA-GAGCCTAGAA  1041

seq1  GAGATGGCTCAGTGGTTAAGGGCTCTGAGTGCTTTTACAAAGGGACAGGC  1098
      ||||| |||||  ||||| ||  ||||| ||||||||| |||||||||||
seq2  GAGAT-GCTCATGGGTTAGGGCTTCTGA-TGCTTTTAC-AAGGGACAGGC  1088

seq1  TCTGTTCCCAGCACCTACGTGGTGACTCACAAATGCC  1135
      |||||| ||||||| ||||||||||||||||||||||
seq2  TCTGTTTCCAGCACTTACGTGGTGACTCACAAATGCC  1125

seq1: chr10_18071052_18072207
seq2: B6Ng01-002M10.g_68_1209 (reverse)

seq1  TCCCATGGGTCAATGTCACAGCCTTTCCTTTTGTATTTTAGTGTGTCTTT  50
      ||||||||||| ||||||||||  |||| |||||||||||||| |||  |
seq2  TCCCATGGGTC-ATGTCACAGC--TTCC-TTTGTATTTTAGTG-GTC--T  43

seq1  AAGAAGAAATAATTAAATACCAGTGGTTACATTGTTTTTTTTTTCTCTCA  100
       ||||| ||||||  |||  |||||| || ||   |||||||||||||||
seq2  CAGAAG-AATAAT--AATTACAGTGGATAAAT--GTTTTTTTTTCTCTCA  88

seq1  TAACGATTGTAATTCAGCTGCAGCTGTAATGTCATGTGATGATAATCCAG  150
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  TAACGA-TGTAA-TCAGCTGCAGCTGTAATGTCATGTGATGATAATCCAG  136

seq1  GAATTTTCCAGAAGGAAAGTGAACTGGCTAGAGTTACCATGTTTAGTTCT  200
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  GAATTTTCCAGAAGGAAAGTG-ACTGGCTAGAGTTACCATGTTTAG-TCT  184

seq1  CC-TTTTTCTCAGGAAGTGTTGGCTGGTTTTCTTTCTCCCCATTTGTACT  249
      || ||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  CCTTTTTTCTCAGGAAATGTTGGCTGGGTTTCTTTCTCCCCATTTGTACT  234

seq1  GTGTATCTCTGAGTCTGGGTATATGCCTGTGTGTCACAGTGCACAGAGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTCTGAGTCTGGGTATATGCCTGTGTGTCACAGTGCACAGAGAC  284

seq1  AGCGCTTGCAGGAGCTGATTCTCTTCGTC-TTCCCAGTGTGTCTTAGGGA  348
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCGCTTGCAGGAGCTGATTCTCTTCGTCTTTCCCAGTGTGTCTTAGGGA  334

seq1  CCAGACTCCGTTCCTCAGGCTTTACCGTGGAGCCATCTCTCCAACCAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTCCGTTCCTCAGGCTTTACCGTGGAGCCATCTCTCCAACCAAGG  384

seq1  AAGGCTCTGTTCCCTAAAAGATACACTTACTTAATGGAAGAGTCACCATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCTGTTCCCTAAAAGATACACTTACTTAATGGAAGAGTCACCATT  434

seq1  TATTTCAAGATTTCTCTCTCTCTCTCTCTCTCTTAAATAGGGTTATTCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAAGATTTCTCTCTCTCTCTCTCTCTCTTAAATAGGGTTATTCTA  484

seq1  GGAATAAATTTGTGTCCTTTCGATTATTCAAGGTACTCTGTAGCCTCTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAATTTGTGTCCTTTCGATTATTCAAGGTACTCTGTAGCCTCTGG  534

seq1  TTTGCTCCATTTCCCCTGTAGCTTAAAGGACATTTGGGTTTTAGTCTTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCATTTCCCCTGTAGCTTAAAGGACATTTGGGTTTTAGTCTTTA  584

seq1  TTTCTATTTCCTGCCACAAATAAATGGAATGAAAGCAGGTCCACGAGAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTTCCTGCCACAAATAAATGGAATGAAAGCAGGTCCACGAGAAA  634

seq1  GAATTGAAGTTCCAATGTTCTTCTGCTCAACATTTTTTTTTGCTTTGTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAAGTTCCAATGTTCTTCTGCTCAACATTTTTTTTTGCTTTGTTT  684

seq1  TGCTTAAATGTCATTACATGATTTTTAGAATTTTGAAGATGTGTGGGTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAATGTCATTACATGATTTTTAGAATTTTGAAGATGTGTGGGTGA  734

seq1  TTTGAAGTAGTTCCACCATACCAATAAACCAAGGGGTCTTGGGGAACATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTAGTTCCACCATACCAATAAACCAAGGGGTCTTGGGGAACATA  784

seq1  AATATTTTGTTTTCTGTGTTGTCACTTAACTTCTATATATTTCTCTTTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTGTTTTCTGTGTTGTCACTTAACTTCTATATATTTCTCTTTAA  834

seq1  AATTCCAAGGGACAGCCACTTTTATTATAACCTTTCCCCCCATGTGGTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAAGGGACAGCCACTTTTATTATAACCTTTCCCCCCATGTGGTGA  884

seq1  ACTTTATAAGGTACATTAACATTCAAAAGTGAGAAGAAATGTTAGCCTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATAAGGTACATTAACATTCAAAAGTGAGAAGAAATGTTAGCCTGG  934

seq1  AGTTTTCTGTGCTCCAGCTACTTTGATAGATCATTGAAATCTTAGCCATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTGTGCTCCAGCTACTTTGATAGATCATTGAAATCTTAGCCATC  984

seq1  ACAGCCTGGATTGACTAAATGTTAGAGGAAATAGGAAGAACGCCATCCCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGGATTGACTAAATGTTAGAGGAAATAGGAAGAACGCCATCCCA  1034

seq1  GAGGCGTGGGTGCATAGACACTGCGCGAGAAGTACCATGAAGATGTCGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGTGGGTGCATAGACACTGCGCGAGAAGTACCATGAAGATGTCGCT  1084

seq1  CCCGTTGCTCCTTGGCGGGAAGGCACAGGCTGTGGGGCTTCAGTTGTGTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTGCTCCTTGGCGGGAAGGCACAGGCTGTGGGGCTTCAGTTGTGTT  1134

seq1  TTGAATTC  1156
      ||||||||
seq2  TTGAATTC  1142