BAC Information

Click to search

BAC

Clone NameB6Ng01-002N16
Chromosome10 (Build37)
Map Location 74,067,890 - 74,068,941
singlet/doubletsinglet
Overlap genePcdh15
Upstream geneLOC623191
Downstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002N16.bB6Ng01-002N16.g
ACCDH840756DH840757
length1,0531,106
definitionDH840756|Mus musculus domesticus DNA, BAC clone: B6Ng01-002N16, 5' end.DH840757|Mus musculus domesticus DNA, BAC clone: B6Ng01-002N16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttgtgggaatcctactctcaggcccctgctaacaatagtattt
gttttttaaatagccatgttactgctgagaacttaagtccaggacaatgt
ttctttatgctatgggccagtcatcttcaattcaatctttttagataagt
actacagttattctctcgtttatttttgctccgtctaaatctatgtgatg
ctaaagtatcctgtagtgacttaagaaatacagtcacccaatggcatgtg
ttcatgaccatgagcaagcaccattgttgaattttcagaatgttgaataa
atcctcgtattaaaacagtacaaaccagaagctctgtgttcaaactagtg
aaactaagacaaatattccatgaccatacaagaaacagtcaatgatatac
aatgtagtatcttacaccagtcttacagtatttgtattaactttacaaag
tcaggatagttttgatggtattatagttctttcctgtgtgtcaaatgcat
agacaagtggttgacatttgcctatgtatggtaaatatgtgtatatttat
aagtgcacatgcatagtatatatatatatatatatatatatatatatata
tatacatacatacatatgtattatatatgtaatcgttgtatttattcata
ctgaagaaggggtaactaagactattaactctgtacattaatacattcat
cattaatatcacagggagtattttcagtataaaaaagtcctcagtatgct
cacttatatgtaactatctgataaatgaacatatagcaggaattactgtc
agttttgatgaaacacacttatttcatgtcattctcttacgcatctgtac
actttctgagtcttatgcaaatgcattcttttcccttggaatttcatatt
attaaattcacacactcatccaatatgaatgtcttttctcaaagaacaca
tggatggggtcatattacctaatgatctaatgtttatttcttcaacttta
agtactaattgactaaaaccttttatccataagattttgtgattaccttg
ttc
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctcattcaactt
tggtacctggtatctttccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttgat
taggatttttgtccctttgccctttagtgagtctagctaagggtttatct
atcttgttgattttctcaaagaacccaactcctcgtttggttaattcttt
gaatagttcttcttgtttccacttggtgatttcacccctgagttgattat
tttcctgccgtctactcctcttgggtgaattgcttccttttttctagagc
ttttagatgtgttgtcagctgctagtatgtgctctctccgtacattttga
gtactcagagcaatgagtttcctcttaaaatgctttcattgtgtccaaag
gttggtcatgtgccttcatttcataactctaaaagtcttaatttcttcta
ttcatccttgacagggattcatatggagaagaagttagtcagtttccact
atttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_74067890_74068941
seq2: B6Ng01-002N16.b_48_1100

seq1  GAATTCCTTGTGGGAATCCTACTCTCAGGCCCCTGCTAACAATAGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTGGGAATCCTACTCTCAGGCCCCTGCTAACAATAGTATTT  50

seq1  GTTTTTTAAATAGCCATGTTACTGCTGAGAACTTAAGTCCAGGACAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTAAATAGCCATGTTACTGCTGAGAACTTAAGTCCAGGACAATGT  100

seq1  TTCTTTATGCTATGGGCCAGTCATCTTCAATTCAATCTTTTTAGATAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATGCTATGGGCCAGTCATCTTCAATTCAATCTTTTTAGATAAGT  150

seq1  ACTACAGTTATTCTCTCGTTTATTTTTGCTCCGTCTAAATCTATGTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGTTATTCTCTCGTTTATTTTTGCTCCGTCTAAATCTATGTGATG  200

seq1  CTAAAGTATCCTGTAGTGACTTAAGAAATACAGTCACCCAATGGCATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTATCCTGTAGTGACTTAAGAAATACAGTCACCCAATGGCATGTG  250

seq1  TTCATGACCATGAGCAAGCACCATTGTTGAATTTTCAGAATGTTGAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACCATGAGCAAGCACCATTGTTGAATTTTCAGAATGTTGAATAA  300

seq1  ATCCTCGTATTAAAACAGTACAAACCAGAAGCTCTGTGTTCAAACTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCGTATTAAAACAGTACAAACCAGAAGCTCTGTGTTCAAACTAGTG  350

seq1  AAACTAAGACAAATATTCCATGACCATACAAGAAACAGTCAATGATATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGACAAATATTCCATGACCATACAAGAAACAGTCAATGATATAC  400

seq1  AATGTAGTATCTTACACCAGTCTTACAGTATTTGTATTAACTTTACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTATCTTACACCAGTCTTACAGTATTTGTATTAACTTTACAAAG  450

seq1  TCAGGATAGTTTTGATGGTATTATAGTTCTTTCCTGTGTGTCAAATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATAGTTTTGATGGTATTATAGTTCTTTCCTGTGTGTCAAATGCAT  500

seq1  AGACAAGTGGTTGACATTTGCCTATGTATGGTAAATATGTGTATATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTGGTTGACATTTGCCTATGTATGGTAAATATGTGTATATTTAT  550

seq1  AAGTGCACATGCATAGTATATATATATATATATATATATATATATATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCACATGCATAGTATATATATATATATATATATATATATATATATA  600

seq1  TATACATACATACATATGTATTATATATGTAATCGTTGTATTTATTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATACATACATATGTATTATATATGTAATCGTTGTATTTATTCATA  650

seq1  CTGAAGAAGGGGTAACTAAGACTATTAACTCTGTACATTAATACATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAGGGGTAACTAAGACTATTAACTCTGTACATTAATACATTCAT  700

seq1  CATTAATATCACAGGGAGTATTTTCAGTATAAAAAAGTCCTCAGTATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATATCACAGGGAGTATTTTCAGTATAAAAAAGTCCTCAGTATGCT  750

seq1  CACTTATATGTAACTATCTGATAAATGAACATATAGCAGGAATTACTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATATGTAACTATCTGATAAATGAACATATAGCAGGAATTACTGTC  800

seq1  AGTTTTGATGAAACACACTTATTTCATGTCA-TCTCTTACGCATCTGTAC  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGTTTTGATGAAACACACTTATTTCATGTCATTCTCTTACGCATCTGTAC  850

seq1  ACATTCTGAGTCTTATGCAAATGCATTCTTTTTCACATTGGAA-TTCATA  898
      || |||||||||||||||||||||||||||||   | |||||| ||||||
seq2  ACTTTCTGAGTCTTATGCAAATGCATTCTTTT--CCCTTGGAATTTCATA  898

seq1  TTATTAAATTCACACACTCATTCAATATGAAATGTC-TTTCTCAAAGAAC  947
      ||||||||||||||||||||| ||||||| |||||| |||||||||||||
seq2  TTATTAAATTCACACACTCATCCAATATG-AATGTCTTTTCTCAAAGAAC  947

seq1  ACAT-GAT-GGGTCATATTACCTAATGAT-TAATGTTTATTTCTTCAACT  994
      |||| ||| |||||||||||||||||||| ||||||||||||||||||||
seq2  ACATGGATGGGGTCATATTACCTAATGATCTAATGTTTATTTCTTCAACT  997

seq1  TTAAAGTACTAATTGACTAAAAACCTTTATTCATAAGATTTTGTGATTAA  1044
      || ||||||||||||||||||| | ||||| ||||||||||||||||| |
seq2  TT-AAGTACTAATTGACTAAAACCTTTTATCCATAAGATTTTGTGATT-A  1045

seq1  CCTTGTTC  1052
      ||||||||
seq2  CCTTGTTC  1053