BAC Information

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BAC

Clone NameB6Ng01-002P08
Chromosome10 (Build37)
Map Location 102,425,921 - 102,556,154
singlet/doubletdoublet
Overlap geneCart1, Lrriq1
Upstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413
Downstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002P08.bB6Ng01-002P08.g
ACCDH840826DH840827
length1,131768
definitionDH840826|Mus musculus domesticus DNA, BAC clone: B6Ng01-002P08, 5' end.DH840827|Mus musculus domesticus DNA, BAC clone: B6Ng01-002P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,425,921 - 102,427,052)(102,555,387 - 102,556,154)
sequence
gaattcttatggtgtcccatgccaacacaaaggaagcactccaggaagct
aaggatggagacaattagtagtccacaaggaagaaatacctcattgctta
cccaattctacatgctcaaatacatgtaaacaacaataaaagactcacca
gatccagttaacacatttatgcatttatacacatataactataaaaacta
aagcaaaagagaccatgaattcaagaggtagtgaatagagtgtggaattt
gaggaagaaaatggaggcaggggacattttgtaagttttaattacaaaaa
tatataattattagttaattggttgtgggtcaaaatagcatggaactatt
tttttcaaaccatatggtacctagcagaatgtaagcagcagatcagaggg
agtcacaacgacctgagtataattgagaaacatcgggtaacacatccaaa
accatttagttttagagatgctgagcactgttacagataaatagactgtt
tgtcatcttcaagagtctcatggtcatgaaagaaaaggcacaacttcgga
actaagagtatattcagaatgcacaaaactttggcttcaacttcagcact
gactgaataagcaggacatggtggcatagctgtgtagttatagcactcag
aatgtggatgcagaaagaacagaatttcaagatcattattgtctacacag
tcattcttcaatgaatagagagtctacagccagtcggaatacataagaca
tttctcaaaaatttaaaatcttaaagaactttttctttttgaaaaaattt
tattggatattttctttattttcatttcaaatgttatctcctttcgcagt
ttccccctccccctagaaacctcctatcgcatacctcttcccctgcttct
atgagggtgctctcacacaaacacacacacacacacacacacacacacac
actgactccggcctccacaacctgacattcccctacactggggcatcaag
ccttcaactggaacaagggcctctcctcccattgatgcttaccaggccat
cctctgctacatatgcggctatagccattggtccctccatgtgtacttct
ttggtgctggtttagttcctgggagctctga
gaattcagacagcaagcactgtggtcatgagattacatatgggaataaat
acagtgtttaaacttttattaaaagctattcacaatacgttatcagaaaa
aaatgcatctccattttgttcatgtcctgagacattggagaagacttaat
tttatgtgatgagctacttagagaaattttcacttctcaagctgtggcat
aattactaccgatttttaaggaagggttgatgtaagaattgggggtaaag
acagcgggaagaataaaaatttggagtgtggttataaaaggctattaggc
taaggaatatacagatggcaatgagatgagtgttataaagaagccaatta
tttagagagagggaggacatcagaaaagggaacgggtatgggtgtgagaa
tgtcattggggagaaatgaattatgaaaaagtctatgtatataaattcta
taatgacacccatcactttgcatggtaaccttaaaattaacagcaaaccc
ttttatgtaatatatgagagagaagaggggaggaatatttaaagatggcc
tagtattttaatgaacaggtaagacaataatggaaaaatatgaaagatgt
cttgaggaaatgtcaggaattgtcagaatattgcagatgcatttatctga
tagtctatctttgagaagagatcatctctgagaaccagtgttgtttatga
gcagtaatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_102425921_102427052
seq2: B6Ng01-002P08.b_43_1173

seq1  GAATTCTTATGGTGTCCCATGCCAACACAAAGGAAGCACTCCAGGAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGGTGTCCCATGCCAACACAAAGGAAGCACTCCAGGAAGCT  50

seq1  AAGGATGGAGACAATTAGTAGTCCACAAGGAAGAAATACCTCATTGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGAGACAATTAGTAGTCCACAAGGAAGAAATACCTCATTGCTTA  100

seq1  CCCAATTCTACATGCTCAAATACATGTAAACAACAATAAAAGACTCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTCTACATGCTCAAATACATGTAAACAACAATAAAAGACTCACCA  150

seq1  GATCCAGTTAACACATTTATGCATTTATACACATATAACTATAAAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGTTAACACATTTATGCATTTATACACATATAACTATAAAAACTA  200

seq1  AAGCAAAAGAGACCATGAATTCAAGAGGTAGTGAATAGAGTGTGGAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAGAGACCATGAATTCAAGAGGTAGTGAATAGAGTGTGGAATTT  250

seq1  GAGGAAGAAAATGGAGGCAGGGGACATTTTGTAAGTTTTAATTACAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAAAATGGAGGCAGGGGACATTTTGTAAGTTTTAATTACAAAAA  300

seq1  TATATAATTATTAGTTAATTGGTTGTGGGTCAAAATAGCATGGAACTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATTATTAGTTAATTGGTTGTGGGTCAAAATAGCATGGAACTATT  350

seq1  TTTTTCAAACCATATGGTACCTAGCAGAATGTAAGCAGCAGATCAGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAACCATATGGTACCTAGCAGAATGTAAGCAGCAGATCAGAGGG  400

seq1  AGTCACAACGACCTGAGTATAATTGAGAAACATCGGGTAACACATCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAACGACCTGAGTATAATTGAGAAACATCGGGTAACACATCCAAA  450

seq1  ACCATTTAGTTTTAGAGATGCTGAGCACTGTTACAGATAAATAGACTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTAGTTTTAGAGATGCTGAGCACTGTTACAGATAAATAGACTGTT  500

seq1  TGTCATCTTCAAGAGTCTCATGGTCATGAAAGAAAAGGCACAACTTCGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTTCAAGAGTCTCATGGTCATGAAAGAAAAGGCACAACTTCGGA  550

seq1  ACTAAGAGTATATTCAGAATGCACAAAACTTTGGCTTCAACTTCAGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAGTATATTCAGAATGCACAAAACTTTGGCTTCAACTTCAGCACT  600

seq1  GACTGAATAAGCAGGACATGGTGGCATAGCTGTGTAGTTATAGCACTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAATAAGCAGGACATGGTGGCATAGCTGTGTAGTTATAGCACTCAG  650

seq1  AATGTGGATGCAGAAAGAACAGAATTTCAAGATCATTATTGTCTACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGATGCAGAAAGAACAGAATTTCAAGATCATTATTGTCTACACAG  700

seq1  TCATTCTTCAATGAATAGAGAGTCTACAGCCAGTCGGAATACATAAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTCAATGAATAGAGAGTCTACAGCCAGTCGGAATACATAAGACA  750

seq1  TTTCTCAAAAATTTAAAATCTTAAAGAACTTTTTCTTTTTGAAAAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTCTCAAAAATTTAAAATCTTAAAGAACTTTTTCTTTTTG-AAAAAATT  799

seq1  TTATTGGATATTTTCTTTATTTTCATTTCAAATGTTATCTCCTTTCGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGATATTTTCTTTATTTTCATTTCAAATGTTATCTCCTTTCGCAG  849

seq1  TTTCCCCCTCCCCCTAGAAACCTCCTATCGCATACCTCTTCCCCTGCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCTCCCCCTAGAAACCTCCTATCGCATACCTCTTCCCCTGCTTC  899

seq1  TATGAGGGTGCTCTCACACAAACACACACACACACACACACACACACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGGTGCTCTCACACAAACACACACACACACACACACACACACACA  949

seq1  CACTGACTCCGGCCTCCAC-ACCTGACATTCCCCTACACTGGGGCATCAA  999
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CACTGACTCCGGCCTCCACAACCTGACATTCCCCTACACTGGGGCATCAA  999

seq1  GCCTTCAACTGGAACAAGGGCCTCTCCTCCCATTGATGCTTAACAAGGCC  1049
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  GCCTTCAACTGGAACAAGGGCCTCTCCTCCCATTGATGCTT-ACCAGGCC  1048

seq1  ATCCTCTGCTACATATGCGGCTATAGCCATGGGTCCCTCCATGTGTAC-T  1098
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  ATCCTCTGCTACATATGCGGCTATAGCCATTGGTCCCTCCATGTGTACTT  1098

seq1  CTTTGGTTGCTGGTTTAGTTCCTGGGAGCTCTGA  1132
      |||||| |||||||||||||||||||||||||||
seq2  CTTTGG-TGCTGGTTTAGTTCCTGGGAGCTCTGA  1131

seq1: chr10_102555387_102556154
seq2: B6Ng01-002P08.g_67_834 (reverse)

seq1  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50

seq1  ATATATATATATTACTGCTCATAAACAACACTGGTTCTCAGAGATGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATTACTGCTCATAAACAACACTGGTTCTCAGAGATGATCT  100

seq1  CTTCTCAAAGATAGACTATCAGATAAATGCATCTGCAATATTCTGACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAAGATAGACTATCAGATAAATGCATCTGCAATATTCTGACAAT  150

seq1  TCCTGACATTTCCTCAAGACATCTTTCATATTTTTCCATTATTGTCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACATTTCCTCAAGACATCTTTCATATTTTTCCATTATTGTCTTAC  200

seq1  CTGTTCATTAAAATACTAGGCCATCTTTAAATATTCCTCCCCTCTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATTAAAATACTAGGCCATCTTTAAATATTCCTCCCCTCTTCTCT  250

seq1  CTCATATATTACATAAAAGGGTTTGCTGTTAATTTTAAGGTTACCATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATATTACATAAAAGGGTTTGCTGTTAATTTTAAGGTTACCATGCA  300

seq1  AAGTGATGGGTGTCATTATAGAATTTATATACATAGACTTTTTCATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATGGGTGTCATTATAGAATTTATATACATAGACTTTTTCATAATT  350

seq1  CATTTCTCCCCAATGACATTCTCACACCCATACCCGTTCCCTTTTCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCCCCAATGACATTCTCACACCCATACCCGTTCCCTTTTCTGAT  400

seq1  GTCCTCCCTCTCTCTAAATAATTGGCTTCTTTATAACACTCATCTCATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCCTCTCTCTAAATAATTGGCTTCTTTATAACACTCATCTCATTG  450

seq1  CCATCTGTATATTCCTTAGCCTAATAGCCTTTTATAACCACACTCCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTATATTCCTTAGCCTAATAGCCTTTTATAACCACACTCCAAAT  500

seq1  TTTTATTCTTCCCGCTGTCTTTACCCCCAATTCTTACATCAACCCTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTTCCCGCTGTCTTTACCCCCAATTCTTACATCAACCCTTCCT  550

seq1  TAAAAATCGGTAGTAATTATGCCACAGCTTGAGAAGTGAAAATTTCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCGGTAGTAATTATGCCACAGCTTGAGAAGTGAAAATTTCTCTA  600

seq1  AGTAGCTCATCACATAAAATTAAGTCTTCTCCAATGTCTCAGGACATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTCATCACATAAAATTAAGTCTTCTCCAATGTCTCAGGACATGAA  650

seq1  CAAAATGGAGATGCATTTTTTTCTGATAACGTATTGTGAATAGCTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGAGATGCATTTTTTTCTGATAACGTATTGTGAATAGCTTTTAA  700

seq1  TAAAAGTTTAAACACTGTATTTATTCCCATATGTAATCTCATGACCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTTAAACACTGTATTTATTCCCATATGTAATCTCATGACCACAG  750

seq1  TGCTTGCTGTCTGAATTC  768
      ||||||||||||||||||
seq2  TGCTTGCTGTCTGAATTC  768