BAC Information

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BAC

Clone NameB6Ng01-003A04
Chromosome10 (Build37)
Map Location 28,066,715 - 28,194,212
singlet/doubletdoublet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003A04.bB6Ng01-003A04.g
ACCDH840860DH840861
length1,1881,129
definitionDH840860|Mus musculus domesticus DNA, BAC clone: B6Ng01-003A04, 5' end.DH840861|Mus musculus domesticus DNA, BAC clone: B6Ng01-003A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,066,715 - 28,067,906)(28,193,076 - 28,194,212)
sequence
gaattctgagccctgtaattgtgggctgctgagacctgaacaagctgatg
taaagccgtgtccagagcctagggatccaggcatgttccaggatgttcat
gctggagaacagggacctcaatcatttcagagaggaaagtaagcaccaaa
gactggggcattgggtgagatcattagagaaaccttggctcaagagctgg
aattcagcaaacacaagatgcacagaaaggaagatctgtaggctgttgct
atagggttagaagacacaacacatccgttcggttgagtgaagtggagcag
ccatataagaaggatctcattgagagatcacggtgagaaaaggtggtaaa
taagatggatgatcaggtaaggacatgaacggaattggaagtagcaacag
ctgctgttggcaggactgacatcaggcaataaacgacacagactgggcag
tgcagtcaaattggaaagtctgcgggaggcacagattaaagaagatgaat
ggttttggatccagtgggtaacagttaacagattttggggaaatgtgaat
gctgtatagtataatcctctaagcctcaaggttttacttttatacttagc
ctgtttctcattttctggcttgaactaactggtcattagaaccattgatt
attttcattccttttctaccttcataatggccttcatacaaatgatctta
aataagaataaaggatgagacattctaatggattttggcttttataccac
agtaaggtttgctagtatagttacttaaagcctttgatggtcttcatgtt
gtctatgagaatgaactttttggaaaacgccagatgcctctcaccttctg
gatgcttcagaatcactgttctcagaacaggagtaagaatagttctttct
ttcatagtgtcctaacttcgtgttgcctactgttgacctaagctgataga
cggagtctagcctgatatttaattctaattgtctctgtggactttctcat
taaacatagtgattcttctaggcatctctggcttacaccgaattctgttc
cacccagaggcctttgtgctactactagtagctgccaccctaataatagc
cagtgtttcccttggttcattgaaatttataagttcacacattgtagcct
gccttcatgttctttgttaacgcaccctgttgtaacgt
gaattcaaacacattaccagtcaaaacattctcatccctaaacttcattc
ttaggcactagaaacagaagtgtttactctataatcagcactgactatac
agcagaaaaacctcacaactgtgcaattaaaaatatccatttgaaagtga
taaggaaaggtatgaaattctattttaataaaaacatttaaaaattcatc
attctcctcagtgtcttatatttgaaaatatggtgatttatattcaaagg
tacaatgaaattctgaaataggtttttaatctgttttccttttgggagac
tattaattacttactatgaaaaactggcattcagtggcctttccttaagc
acagtgtgataatggtttcttaattttaggaatgcagacttagcagtttt
acgtgtaattattcattataaccattaattgggtttgacaaggacatagt
ctggttatgcacatacatagacttgaaaactagcctatattccaagattt
tgaaattccatataccgtatagtgattaattttcaaatcaaataatttat
gtaggataaaggaggggtaatgatgtttttttttaatttttaaatattta
cttatttacctatttacatctttattttatgtgcatgtgtgtgctcacat
cacagtgtatttggagatcagagaaccactttcaggagtgagtttttttc
tgatacaatgtagggttcaggggtctctctattcttacttagtgggtttc
aaatctgtaagctgtggctatgagaaagaaatcacaacctctctgtacac
tggatctattcccccgcctcctgctcccccttccccaccatggtattgga
cattgaattaggagctttatccatgctaggacagtgttctactactgtgc
aatatctcttcactcttcttaagtttaattacttatgtttttctgtctgg
gttgctatagaagctttgagaccgtagattgtgactgtaacactgtgttt
ggaaacaaccagtagaacctatagtgggggctttccaggctacagagacc
taccgtttattaagtgatggccatgccaactaagactgggagttcatatt
tcctgaactcccaccatggcccaacacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28066715_28067906
seq2: B6Ng01-003A04.b_49_1236

seq1  GAATTCTGAGCCCTGTAATTGTGGGCTGCTGAGACCTGAACAAGCTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCCCTGTAATTGTGGGCTGCTGAGACCTGAACAAGCTGATG  50

seq1  TAAAGCCGTGTCCAGAGCCTAGGGATCCAGGCATGTTCCAGGATGTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCGTGTCCAGAGCCTAGGGATCCAGGCATGTTCCAGGATGTTCAT  100

seq1  GCTGGAGAACAGGGACCTCAATCATTTCAGAGAGGAAAGTAAGCACCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAACAGGGACCTCAATCATTTCAGAGAGGAAAGTAAGCACCAAA  150

seq1  GACTGGGGCATTGGGTGAGATCATTAGAGAAACCTTGGCTCAAGAGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGGCATTGGGTGAGATCATTAGAGAAACCTTGGCTCAAGAGCTGG  200

seq1  AATTCAGCAAACACAAGATGCACAGAAAGGAAGATCTGTAGGCTGTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCAAACACAAGATGCACAGAAAGGAAGATCTGTAGGCTGTTGCT  250

seq1  ATAGGGTTAGAAGACACAACACATCCGTTCGGTTGAGTGAAGTGGAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTTAGAAGACACAACACATCCGTTCGGTTGAGTGAAGTGGAGCAG  300

seq1  CCATATAAGAAGGATCTCATTGAGAGATCACGGTGAGAAAAGGTGGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAAGAAGGATCTCATTGAGAGATCACGGTGAGAAAAGGTGGTAAA  350

seq1  TAAGATGGATGATCAGGTAAGGACATGAACGGAATTGGAAGTAGCAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGATGATCAGGTAAGGACATGAACGGAATTGGAAGTAGCAACAG  400

seq1  CTGCTGTTGGCAGGACTGACATCAGGCAATAAACGACACAGACTGGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTTGGCAGGACTGACATCAGGCAATAAACGACACAGACTGGGCAG  450

seq1  TGCAGTCAAATTGGAAAGTCTGCGGGAGGCACAGATTAAAGAAGATGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCAAATTGGAAAGTCTGCGGGAGGCACAGATTAAAGAAGATGAAT  500

seq1  GGTTTTGGATCCAGTGGGTAACAGTTAACAGATTTTGGGGAAATGTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGGATCCAGTGGGTAACAGTTAACAGATTTTGGGGAAATGTGAAT  550

seq1  GCTGTATAGTATAATCCTCTAAGCCTCAAGGTTTTACTTTTATACTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATAGTATAATCCTCTAAGCCTCAAGGTTTTACTTTTATACTTAGC  600

seq1  CTGTTTCTCATTTTCTGGCTTGAACTAACTGGTCATTAGAACCATTGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTCATTTTCTGGCTTGAACTAACTGGTCATTAGAACCATTGATT  650

seq1  ATTTTCATTCCTTTTCTACCTTCATAATGGCCTTCATACAAATGATCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTCCTTTTCTACCTTCATAATGGCCTTCATACAAATGATCTTA  700

seq1  AATAAGAATAAAGGATGAGACATTCTAATGGATTTTGGCTTTTATACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATAAAGGATGAGACATTCTAATGGATTTTGGCTTTTATACCAC  750

seq1  AGTAAGGTTTGCTAGTATAGTTACTTAAAGCCTTTGATGGTCTTCATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGTTTGCTAGTATAGTTACTTAAAGCCTTTGATGGTCTTCATGTT  800

seq1  GTCTATGAGAATGAACTTTTTGGAAAACGCCAGATGCCTCTCACCTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGAGAATGAACTTTTTGGAAAACGCCAGATGCCTCTCACCTTCTG  850

seq1  GATGCTTCAGAATCACTGTTCTCAGAACAGGAGTAAGAATAGTTCTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTCAGAATCACTGTTCTCAGAACAGGAGTAAGAATAGTTCTTTCT  900

seq1  TTCATAGTGTCCTAACTTCGTGTTGCCTACTGTTGACCTAAGCTGATAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTGTCCTAACTTCGTGTTGCCTACTGTTGACCTAAGCTGATAGA  950

seq1  CGGAGTCTAGCCTGATATTTAATTCTAATTGTCTCTGTGGACTTTCTCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTCTAGCCTGATATTTAATTCTAATTGTCTCTGTGGACTTTCTCAT  1000

seq1  TAAACAATAGTGATTCTTCTAGGCATCTCTGGCTTTACACCGAATTCTGT  1050
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAAAC-ATAGTGATTCTTCTAGGCATCTCTGGC-TTACACCGAATTCTGT  1048

seq1  TCCACCCAAGAGG-CTTTGTGCTACTACTAGTAGCTGCCA-CCTAAT-AT  1097
      ||||||| ||||| |||||||||||||||||||||||||| |||||| ||
seq2  TCCACCC-AGAGGCCTTTGTGCTACTACTAGTAGCTGCCACCCTAATAAT  1097

seq1  AGCCAGTTGTTTCCCCTTGGGTCATTTGATTTTTAT-AGTTCACACATTG  1146
      |||||| ||||| ||||||| ||| ||||  ||||| |||||||||||||
seq2  AGCCAG-TGTTT-CCCTTGGTTCA-TTGAAATTTATAAGTTCACACATTG  1144

seq1  TAGCCTGCCTTCATG-TCTTTGTTATAACGCACCTTGTGTGTAACGT  1192
      ||||||||||||||| |||||||  ||||||||| ||| ||||||||
seq2  TAGCCTGCCTTCATGTTCTTTGT--TAACGCACCCTGT-TGTAACGT  1188

seq1: chr10_28193076_28194212
seq2: B6Ng01-003A04.g_67_1195 (reverse)

seq1  CTGTGTTGGGCCCATTGTGTGGAGCTCAGGAAATATGAACT-CCAGTCCT  49
      |||||||||| |||| ||| |||| |||||||||||||||| ||||| ||
seq2  CTGTGTTGGG-CCATGGTG-GGAGTTCAGGAAATATGAACTCCCAGT-CT  47

seq1  TAGTTTTGCATGGCCATCACTTTATATACTGTTAGGTCTCTGTAGCCTGG  99
      ||| || ||||||||||||||| ||| || | ||||||||||||||||||
seq2  TAG-TTGGCATGGCCATCACTTAATAAAC-GGTAGGTCTCTGTAGCCTGG  95

seq1  AAAGCCCACACTAATAGGTTCTACTGGTGGTTTCCAAACACAGTGTTACA  149
      ||||||| |||| ||||||||||||||| |||||||||||||||||||||
seq2  AAAGCCCCCACT-ATAGGTTCTACTGGTTGTTTCCAAACACAGTGTTACA  144

seq1  GTCACAATCTACGGTTCTCAAAGCTTCTATAGCAACCCAGACAGAAAAAC  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTCACAATCTACGG-TCTCAAAGCTTCTATAGCAACCCAGACAGAAAAAC  193

seq1  ATAAGTAATTAAACTTAAGAAGAGGTGAAGAGATATTGCACAGTAGTAGA  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATAAGTAATTAAACTTAAGAAGA-GTGAAGAGATATTGCACAGTAGTAGA  242

seq1  ACACTGTCCTAGCATGGATAAAGCTCCTAATTCAATGTCCAATACCATGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCCTAGCATGGATAAAGCTCCTAATTCAATGTCCAATACCATGG  292

seq1  TGGGGAAGGGGGGAGCAGGAGGCGGGGGAATAGATCCAGTGTACAGAGAG  349
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAA-GGGGGAGCAGGAGGCGGGGGAATAGATCCAGTGTACAGAGAG  341

seq1  GTTGTGATTTCTTTCTCATAGCCACAGCTTACAGATTTGAAACCCACTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGATTTCTTTCTCATAGCCACAGCTTACAGATTTGAAACCCACTAA  391

seq1  GTAAGAATAGAGAGACCCCTGAACCCTACATTGTATCAGAAAAAAACTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAATAGAGAGACCCCTGAACCCTACATTGTATCAGAAAAAAACTCA  441

seq1  CTCCTGAAAGTGGTTCTCTGATCTCCAAATACACTGTGATGTGAGCACAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAAAGTGGTTCTCTGATCTCCAAATACACTGTGATGTGAGCACAC  491

seq1  ACATGCACATAAAATAAAGATGTAAATAGGTAAATAAGTAAATATTTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACATAAAATAAAGATGTAAATAGGTAAATAAGTAAATATTTAAA  541

seq1  AATTAAAAAAAAACATCATTACCCCTCCTTTATCCTACATAAATTATTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAAAAACATCATTACCCCTCCTTTATCCTACATAAATTATTTG  591

seq1  ATTTGAAAATTAATCACTATACGGTATATGGAATTTCAAAATCTTGGAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAATTAATCACTATACGGTATATGGAATTTCAAAATCTTGGAAT  641

seq1  ATAGGCTAGTTTTCAAGTCTATGTATGTGCATAACCAGACTATGTCCTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTAGTTTTCAAGTCTATGTATGTGCATAACCAGACTATGTCCTTG  691

seq1  TCAAACCCAATTAATGGTTATAATGAATAATTACACGTAAAACTGCTAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCCAATTAATGGTTATAATGAATAATTACACGTAAAACTGCTAAG  741

seq1  TCTGCATTCCTAAAATTAAGAAACCATTATCACACTGTGCTTAAGGAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTCCTAAAATTAAGAAACCATTATCACACTGTGCTTAAGGAAAG  791

seq1  GCCACTGAATGCCAGTTTTTCATAGTAAGTAATTAATAGTCTCCCAAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGAATGCCAGTTTTTCATAGTAAGTAATTAATAGTCTCCCAAAAG  841

seq1  GAAAACAGATTAAAAACCTATTTCAGAATTTCATTGTACCTTTGAATATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGATTAAAAACCTATTTCAGAATTTCATTGTACCTTTGAATATA  891

seq1  AATCACCATATTTTCAAATATAAGACACTGAGGAGAATGATGAATTTTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCATATTTTCAAATATAAGACACTGAGGAGAATGATGAATTTTTA  941

seq1  AATGTTTTTATTAAAATAGAATTTCATACCTTTCCTTATCACTTTCAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTATTAAAATAGAATTTCATACCTTTCCTTATCACTTTCAAAT  991

seq1  GGATATTTTTAATTGCACAGTTGTGAGGTTTTTCTGCTGTATAGTCAGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTTTAATTGCACAGTTGTGAGGTTTTTCTGCTGTATAGTCAGTG  1041

seq1  CTGATTATAGAGTAAACACTTCTGTTTCTAGTGCCTAAGAATGAAGTTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTATAGAGTAAACACTTCTGTTTCTAGTGCCTAAGAATGAAGTTTA  1091

seq1  GGGATGAGAATGTTTTGACTGGTAATGTGTTTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAGAATGTTTTGACTGGTAATGTGTTTGAATTC  1129