BAC Information

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BAC

Clone NameB6Ng01-003K07
ChromosomeY (Build37)10 (Build37)
Map Location 1,120,622 - 1,120,965104,053,595 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003K07.bB6Ng01-003K07.g
ACCDH841287DH841288
length9391,019
definitionDH841287|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K07, 5' end.DH841288|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,622 - 1,120,965)(104,053,595 - 104,054,363)
sequence
gaattcctgttctttccaagtctcttaccacgaaggggtgttgaactttg
tcaaatacttttcagcatctgaagagatgatcatgcatttttttttcttt
tagtttgtttatatagtggattttttttctttttttcttcttttttttta
ttacatattttcttcaattacatttccaatgctatcccaaaagccccccc
ccccactcccctacccacccattcccattttttggtcctggcattcccct
gtactggggcatataacgtttgcatgaccaatgggcctctctttccagtg
atggccgactaggtcatcttttgatacatatgcagctagagtcaaaagct
ctggggtactggttagttcataatgttgttcctccgatagggttacagat
ctctttagctccttggatactttctctagcgactccattgggggccctgt
gatccatccaatagttgactgtgagcatccacttctgtgtttgctaggcc
ccagcctagtctcacaagggacagctatatcaccgtccttgcaacaaagg
cttgctagtatatgcaatggtgtcatcgcttggaggctaattatgggatg
gatccctggatatggcagtctctagatggaccatccttttgtctcagctc
tgaacttttgtctctgtaactccttccatgggtgattgtttccaattcta
ggaatgagcaaagtgtccacactttggtcttcgttcttcttcagtttcat
atgttttacatattgtaccttatatctcactatactaagtttctgggtta
atatccactttatcagtgagtacatttcatttgagttcttttgtgatggg
tacctcactcaaggatgatgccctccaggttcaaccattatgtgtatgga
tttctgtatattgatccatttcttgcatacctgaaaaaa
gaattctcacccaacgaataccgaatggctgagaagcacctgaaaaaatg
ttcagaaatcttaatcatcagggaaatgcaaatcaaaaaaaaaaaaaaaa
accctgagattccacctcacaccagtcagaatggctaagatcaaaaattc
aggtgacagcagatactggcgaggatgtggagaaagaggaacactcctcc
attgttggtgggattgcaagcttatacaaccactctggaaatcagtctgg
cggttcctcagaaaattggacatagtactaccagaggatcccacaatacc
tctcctgggcatatatcaagaagatgttctaaccagtaagaaggacacat
gctccactatgttcatagcacccttatttataatagtcagaagctggaaa
gaacccagatgctcctcaacagaggaatggatacagaaaacgtggtacat
ttacacaacggagtactactcagctattaaaaagaatgaatttatgaaat
tcctaggcaaatggatggacctggagggcatcatcctgagtgaggtaacc
caatcacaaaagaactcacatgatatgccctgcttttcttgatagtctcc
agtcagatggtgtgactattgctgggacctagagaaaatgtgaatgggta
actgttagttgaatcttaatcctggtctggcatcatttaagtgggaagtc
aattgttttcatcaaggaaagcaaacaaaaagatttatttatctcattgg
cttaaggtagctaagaaaataaacaccatgttaattatgtacccagaata
ggcagaaacatcttgtccgtgaaaaataaactggcttaaagaggtataat
tatttttattaattgagaattaataatagttattaatgttgtctgtttga
cctgtgtgagttagatccaacatgattccctggagtttaaagatttttaa
tttacaaaaagagataagttagaaatgttcagatatcctcatttgtagtc
tataatattttgggttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120622_1120965
seq2: B6Ng01-003K07.b_211_543

seq1  TTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCAC  50
      |||||||||||||||||| ||||||| |||||           |||||||
seq2  TTACATTTCCAATGCTATCCCAAAAGCCCCCC-----------CCCCCAC  39

seq1  TCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTG  100
      |||||| |||||||| ||||  ||||||| ||||| ||||||||||||||
seq2  TCCCCTACCCACCCATTCCCATTTTTTGGTCCTGGCATTCCCCTGTACTG  89

seq1  GGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCC  150
      |||||||||| ||||||| | |||||||||||||||||||||||||||||
seq2  GGGCATATAACGTTTGCATGACCAATGGGCCTCTCTTTCCAGTGATGGCC  139

seq1  GACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGG  200
      ||||||| |||||||||||| |||||||||||||||||| ||||| ||||
seq2  GACTAGGTCATCTTTTGATACATATGCAGCTAGAGTCAAAAGCTCTGGGG  189

seq1  TACTGGTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTT  250
      |||||||||| |||||| |||||||| || ||||||||  ||||| ||||
seq2  TACTGGTTAGTTCATAATGTTGTTCCTCCGATAGGGTTACAGATCTCTTT  239

seq1  AGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCA  300
      |||||||||| |||||||||||||  |||||||||| ||||| |||||||
seq2  AGCTCCTTGGATACTTTCTCTAGCGACTCCATTGGGGGCCCTGTGATCCA  289

seq1  TCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCC  344
      |||| ||| |||||||||||||||||||||||||||||| ||||
seq2  TCCAATAGTTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCC  333

seq1: chr10_104053595_104054363
seq2: B6Ng01-003K07.g_69_635 (reverse)

seq1  GAGTTCCTTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTC  50
      |||||| ||||||||||||||||| ||||||||||||| | |||||||||
seq2  GAGTTCTTTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGGTC  50

seq1  CATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCAT  100
      |||||||||||||||||||||||||||||||||||||||||||||     
seq2  CATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGC-----  95

seq1  TTACATTTAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAA  150
                                                        
seq2  --------------------------------------------------  95

seq1  ATAATTTAATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTA  200
                                                        
seq2  --------------------------------------------------  95

seq1  ATTAAATTAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATA  250
                                                        
seq2  --------------------------------------------------  95

seq1  ATAATTTTATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATT  300
               | ||||                             |||   
seq2  ---------TGAGTA-----------------------------GTA---  104

seq1  ACATTACATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATC  350
                      |||| ||||||||||||||||| |||||||||||
seq2  ----------------CTCCGTTGTGTAAATGTACCACGTTTTCTGTATC  138

seq1  TATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTAT  400
       ||||||||||||||| ||||||||||||||||||||| ||| |||||||
seq2  CATTCCTCTGTTGAGGAGCATCTGGGTTCTTTCCAGCTTCTGACTATTAT  188

seq1  AAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTG  450
      |||||||| ||||||||| ||||||||||||||||||||||||| |||| 
seq2  AAATAAGGGTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACTGGTTA  238

seq1  GGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGT  500
      |  |||||||| ||||||||||||| ||||||||||  |||||||| |||
seq2  GAACATCTTCTTGATATATGCCCAGGAGAGGTATTGTGGGATCCTCTGGT  288

seq1  AGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGG  550
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  AGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGG  338

seq1  TTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTC  600
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTC  388

seq1  CACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATT  650
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACATCCTCGCCAGTATCTGCTGTCACCTGAATTTTTGATCTTAGCCATT  438

seq1  CTGACTGGTGTGAGGTGGAATCTCAGGG----------TTGTTTTGATTT  690
      ||||||||||||||||||||||||||||          || |||||||||
seq2  CTGACTGGTGTGAGGTGGAATCTCAGGGTTTTTTTTTTTTTTTTTGATTT  488

seq1  GCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCT  740
      ||||||||||||||||||||  |  |||||||||||||||||||||||| 
seq2  GCATTTCCCTGATGATTAAGATTTCTGAACATTTTTTCAGGTGCTTCTCA  538

seq1  GCCATTCGGTATTCCTCAGGTGAGAATTC  769
      |||||||||||||| |  |||||||||||
seq2  GCCATTCGGTATTCGTTGGGTGAGAATTC  567