BAC Information

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BAC

Clone NameB6Ng01-003L09
Chromosome10 (Build37)
Map Location 52,569,856 - 52,714,817
singlet/doubletdoublet
Overlap geneSlc35f1
Upstream geneVgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa
Downstream genePln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003L09.bB6Ng01-003L09.g
ACCDH841336DH841337
length1,132982
definitionDH841336|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L09, 5' end.DH841337|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,569,856 - 52,570,988)(52,713,841 - 52,714,817)
sequence
gaattccttcctatttcagcactgcccacctgttgacctgaatgcctgct
tcccatgttatgttttaaatagtaatagatgtttcttctagtagttagtt
ccatatctctaaataacacaactttcttgctattaccttttggacaaatt
taaagatatcatctgaacttcttattgtgaggggtgaagacttcttatca
tagtccaatttcaatctcccaggctcagaatgcagtgtggtattaccata
tatactgtagatgcttaactaatcagagagagaaagagagagagagagag
agagagtgtaaagggctcccacttcctaatttcccccacttcatcagtgc
catcttactaggactcaaatgattaatcattgactagatcagatcactta
ggatccacacacctccccagaactcataatctgtcagaaaaaatgtcaat
ctaccagcatattcaagccataaatcccagtctaccagccatattcaagc
cttggctctcagtttaccagccatatctaagccatagttgccagtctacc
aaccacactcaacccatagactccaatctgcatgaaggtagtaatagacg
tttggtagtgacaccatttccaggggctcagtgctaaatacttcttgttt
ttaaagaaaattacatgttgactattgttgagtttttaaaacctgtttac
atttcgaatatggctggtagactgggatctgtggcttaaatgtggctggt
gaacaggaatctatgtatcacatttaagatcccagtcattaccttcatga
tctctttaacacagaggcctagtgtcaccttcccactaaaaagttctgtg
ggaggaaccagagtttgtttgcttataatatgtaattgctcagttaagta
aatgtttggaccctatacttgcttgaattttgtgttttctgtacagtgct
tgaaaacctgtttccaacaccaaattatattgttttctataatattcttt
ggtattttatgcctaatatttatactttaatattttatatgctaaattta
cttttcacttacctaaaggctagaacctttttgttagctgtattcaaaat
ttgttaagtcattatattctcacgtggaactg
gaattctggcatatatgtgcatacatgtgagtgagcgtacatgtgagtga
gcgtacatgtgtgtgtgtgtgtgtgtgtgtgtgtatacagggaacaatac
tgattgtcttactttattgctatcttattattgtgagacagactctcact
gaacctggagctcactaagcagataaactggttggctagcaaagctccga
gatactattctcttgtctctacttcccagtgctgagattacaagaatgca
ctggtatgcctagctttgtacaggagtgctggagacctaaactcaggttt
ttatgttggtacagtaatcaccttacccactgagcatctccccagctatg
aattaaaaatctaaatattaactgtattgttcctaaacagtaagaaaatc
atttagcatttatcatcattagaagaaatatcaaagctgtgaaaaaagat
gctcatttttaggagatggcatacaacagttacctcccagggtagtacta
atctattctctcactacaagagcaacaatatccgagggtcctgttgttag
ctagaccacactgcttaggaatactcttctactttggtttaattgtgaaa
attcctgtaactagagccaatcattttccagaactaaagctatgtgttct
ctgggttcttggattggctgccctgttgatgtcaactaatagaaatggaa
agaggactgtcagggaaagatgactaatccatcatgctaccgtctttaac
tggttactcactaattacccccagcaatgaaatggcatgaatcagaaaaa
atacttttcagtctctctgccacccccctttctatgacacctataaaaag
agagtcccacagggacctgaacttttcttagagagccttgccatgattgt
tgttctactgggctatgggctaacccatgtttttaaaattaggttggtat
caaatgacaagcagtctccatggcctcttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_52569856_52570988
seq2: B6Ng01-003L09.b_48_1179

seq1  GAATTCCTTCCTATTTCAGCACTGCCCACCTGTTGACCTGAATGCCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTATTTCAGCACTGCCCACCTGTTGACCTGAATGCCTGCT  50

seq1  TCCCATGTTATGTTTTAAATAGTAATAGATGTTTCTTCTAGTAGTTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGTTATGTTTTAAATAGTAATAGATGTTTCTTCTAGTAGTTAGTT  100

seq1  CCATATCTCTAAATAACACAACTTTCTTGCTATTACCTTTTGGACAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCTCTAAATAACACAACTTTCTTGCTATTACCTTTTGGACAAATT  150

seq1  TAAAGATATCATCTGAACTTCTTATTGTGAGGGGTGAAGACTTCTTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATATCATCTGAACTTCTTATTGTGAGGGGTGAAGACTTCTTATCA  200

seq1  TAGTCCAATTTCAATCTCCCAGGCTCAGAATGCAGTGTGGTATTACCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAATTTCAATCTCCCAGGCTCAGAATGCAGTGTGGTATTACCATA  250

seq1  TATACTGTAGATGCTTAACTAATCAGAGAGAGAAAGAGAGAGAGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTAGATGCTTAACTAATCAGAGAGAGAAAGAGAGAGAGAGAGAG  300

seq1  AGAGAGTGTAAAGGGCTCCCACTTCCTAATTTCCCCCACTTCATCAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGTAAAGGGCTCCCACTTCCTAATTTCCCCCACTTCATCAGTGC  350

seq1  CATCTTACTAGGACTCAAATGATTAATCATTGACTAGATCAGATCACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTACTAGGACTCAAATGATTAATCATTGACTAGATCAGATCACTTA  400

seq1  GGATCCACACACCTCCCCAGAACTCATAATCTGTCAGAAAAAATGTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCACACACCTCCCCAGAACTCATAATCTGTCAGAAAAAATGTCAAT  450

seq1  CTACCAGCATATTCAAGCCATAAATCCCAGTCTACCAGCCATATTCAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGCATATTCAAGCCATAAATCCCAGTCTACCAGCCATATTCAAGC  500

seq1  CTTGGCTCTCAGTTTACCAGCCATATCTAAGCCATAGTTGCCAGTCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCTCAGTTTACCAGCCATATCTAAGCCATAGTTGCCAGTCTACC  550

seq1  AACCACACTCAACCCATAGACTCCAATCTGCATGAAGGTAGTAATAGACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACTCAACCCATAGACTCCAATCTGCATGAAGGTAGTAATAGACG  600

seq1  TTTGGTAGTGACACCATTTCCAGGGGCTCAGTGCTAAATACTTCTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAGTGACACCATTTCCAGGGGCTCAGTGCTAAATACTTCTTGTTT  650

seq1  TTAAAGAAAATTACATGTTGACTATTGTTGAGTTTTTAAAACCTG-TTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTAAAGAAAATTACATGTTGACTATTGTTGAGTTTTTAAAACCTGTTTAC  700

seq1  ATTTCGAATATGGCTGGTAGACTGGGATCTGTGGCTTAAATGTGGCTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGAATATGGCTGGTAGACTGGGATCTGTGGCTTAAATGTGGCTGGT  750

seq1  GAACAGGAATCTATGTATCACATTTAAGATCCCAGTCATTACCTTCATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGAATCTATGTATCACATTTAAGATCCCAGTCATTACCTTCATGA  800

seq1  TCTCTTTAACACAGAGGCCTAGTGTCACCTTCCCACTAAAAAGTTCTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTAACACAGAGGCCTAGTGTCACCTTCCCACTAAAAAGTTCTGTG  850

seq1  GGAGGAACCAGAG-TTGTTTGC-TATAATATGTAATTGCTCAGTTAAGGT  897
      ||||||||||||| |||||||| |||||||||||||||||||||||| ||
seq2  GGAGGAACCAGAGTTTGTTTGCTTATAATATGTAATTGCTCAGTTAA-GT  899

seq1  AAATGTTTGGACCCTATACTTGCTTGAATTTTGTGTTTTCTGTACAGTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGGACCCTATACTTGCTTGAATTTTGTGTTTTCTGTACAGTGC  949

seq1  TTGAAAACCTGTTTCCAACACCAAATTATATTGTTTTCTAT-ATATTCTT  996
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGAAAACCTGTTTCCAACACCAAATTATATTGTTTTCTATAATATTCTT  999

seq1  TGGGTATTTTATGCCTAATATTTATACTTAAATATTTAATATGCTAAAAT  1046
      | ||||||||||||||||||||||||||| ||||||| ||||||| ||||
seq2  T-GGTATTTTATGCCTAATATTTATACTTTAATATTTTATATGCT-AAAT  1047

seq1  TTACTTTTCACCTACCATAAGCTAAGAAACTTTATG-TAGCTGTTATTTC  1095
      ||||||||||| ||||  |||   |||| |||| || |||||||   |||
seq2  TTACTTTTCACTTACCTAAAGGCTAGAACCTTTTTGTTAGCTGT--ATTC  1095

seq1  CAATATTGTTAAGTCATTTATATTCTCACTGTGAACTG  1133
       ||  ||||||||||| ||||||||||||   ||||||
seq2  AAAATTTGTTAAGTCA-TTATATTCTCACGTGGAACTG  1132

seq1: chr10_52713841_52714817
seq2: B6Ng01-003L09.g_68_1049 (reverse)

seq1  TTCAAGGGGCCATGGAGACAGACTGTCCTTTGATA-CAACATATTATTAA  49
      |||||| |||||||||||| |  |||| ||||||| |||| || | ||||
seq2  TTCAAGAGGCCATGGAGACTGCTTGTCATTTGATACCAACCTAATTTTAA  50

seq1  AAACAT-GGTTAGCACCATAGCCAGGTAG-ACAAC-ATCATGGCAA-GCT  95
      |||||| ||||||| ||||||||  |||| ||||| |||||||||| |||
seq2  AAACATGGGTTAGC-CCATAGCCCAGTAGAACAACAATCATGGCAAGGCT  99

seq1  CTCTGAGGAAAGCTCAGGTCCATGTGGGACTCTCTTCTTATAGGTGTCAT  145
      |||| || |||| |||||||| |||||||||||||| |||||||||||||
seq2  CTCTAAGAAAAGTTCAGGTCCCTGTGGGACTCTCTTTTTATAGGTGTCAT  149

seq1  AGGAA-GGGGGTGGCAGGGAGACTGAAAAGTTTTCTTTTCTGGTTCATGG  194
      || || ||||||||||| ||||||||||||| || ||||||| |||||| 
seq2  AGAAAGGGGGGTGGCAGAGAGACTGAAAAGTATT-TTTTCTGATTCATGC  198

seq1  CCATTCATTGCT-GGGGTAATTAGTGAGTAACCAGTTAAAGACGGTAGCA  243
      |  ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATTTCATTGCTGGGGGTAATTAGTGAGTAACCAGTTAAAGACGGTAGCA  248

seq1  TGATGGATTAGTCATCTTTCCTGGACAGTCCTCTTTCCATTTCTATTAGT  293
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  TGATGGATTAGTCATCTTTCCCTGACAGTCCTCTTTCCATTTCTATTAGT  298

seq1  TGACATCAACAGGGCAGCCAATCCAAGAACCCAGAGAACACATAGCTTTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCAACAGGGCAGCCAATCCAAGAACCCAGAGAACACATAGCTTTA  348

seq1  GTTCTGGAAAATGATTGGCTCTAGTTACAGGAATTTTCACAATTAAACCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGAAAATGATTGGCTCTAGTTACAGGAATTTTCACAATTAAACCA  398

seq1  AAGTAGAAGAGTATTCCTAAGCAGTGTGGTCTAGCTAACAACAGGACCCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAGAGTATTCCTAAGCAGTGTGGTCTAGCTAACAACAGGACCCT  448

seq1  CGGATATTGTTGCTCTTGTAGTGAGAGAATAGATTAGTACTACCCTGGGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATATTGTTGCTCTTGTAGTGAGAGAATAGATTAGTACTACCCTGGGA  498

seq1  GGTAACTGTTGTATGCCATCTCCTAAAAATGAGCATCTTTTTTCACAGCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTGTTGTATGCCATCTCCTAAAAATGAGCATCTTTTTTCACAGCT  548

seq1  TTGATATTTCTTCTAATGATGATAAATGCTAAATGATTTTCTTACTGTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTTCTTCTAATGATGATAAATGCTAAATGATTTTCTTACTGTTT  598

seq1  AGGAACAATACAGTTAATATTTAGATTTTTAATTCATAGCTGGGGAGATG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAATACAGTTAATATTTAGATTTTTAATTCATAGCTGGGGAGATG  648

seq1  CTCAGTGGGTAAGGTGATTACTGTACCAACATAAAAACCTGAGTTTAGGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGGTAAGGTGATTACTGTACCAACATAAAAACCTGAGTTTAGGT  698

seq1  CTCCAGCACTCCTGTACAAAGCTAGGCATACCAGTGCATTCTTGTAATCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCACTCCTGTACAAAGCTAGGCATACCAGTGCATTCTTGTAATCT  748

seq1  CAGCACTGGGAAGTAGAGACAAGAGAATAGTATCTCGGAGCTTTGCTAGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGGGAAGTAGAGACAAGAGAATAGTATCTCGGAGCTTTGCTAGC  798

seq1  CAACCAGTTTATCTGCTTAGTGAGCTCCAGGTTCAGTGAGAGTCTGTCTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGTTTATCTGCTTAGTGAGCTCCAGGTTCAGTGAGAGTCTGTCTC  848

seq1  ACAATAATAAGATAGCAATAAAGTAAGACAATCAGTATTGTTCCCTGTAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATAAGATAGCAATAAAGTAAGACAATCAGTATTGTTCCCTGTAT  898

seq1  ACACACACACACACACACACACACACATGTACGCTCACTCACATGTACGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACATGTACGCTCACTCACATGTACGC  948

seq1  TCACTCACATGTATGCACATATATGCCAGAATTC  977
      ||||||||||||||||||||||||||||||||||
seq2  TCACTCACATGTATGCACATATATGCCAGAATTC  982