BAC Information

Click to search

BAC

Clone NameB6Ng01-003M11
Chromosome8 (Build37)10 (Build37)
Map Location 35,211,360 - 35,212,449104,053,513 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1
Downstream geneLOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003M11.bB6Ng01-003M11.g
ACCDH841384DH841385
length1,096992
definitionDH841384|Mus musculus domesticus DNA, BAC clone: B6Ng01-003M11, 5' end.DH841385|Mus musculus domesticus DNA, BAC clone: B6Ng01-003M11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,211,360 - 35,212,449)(104,053,513 - 104,054,363)
sequence
gaattcatgggacaggaaagactatgaagacagtgtatctcttgtctgaa
ccccataaagcttggatatttaacagtgagatggcctggctctattccaa
cctatcataggattcctgggatgtgtgtcaaagaccaaggagccccaatg
aggacccagcccactccactgtctgccgctccacctcttcatctgttgag
aactggatctgattctctatttcctgctctgggtcccaattgccttgttc
acattgtagctaatctcagcagcttctttctcaagcccgacttccactgg
cactggcctggctcattgttttagcaatccaaacttggttcacacacata
cacacacacacacacacacacacacacacacacacacagacacataagtg
tattattgtatgttttgtgatatttggattaatatttgtaacccaatatt
ggtaagattagaataaagaacttgaatttatggtaaattactgccattaa
aatcagtaaacttggggtggagagatagctgagtggttaagatctctggc
tgagcttccagaggacccagcttcactttgcagcatccacaagacagctc
acaaatatctgtagttccagttgcagggggtctgacagcctcacacagac
acacatgtaggcaaaacaccaatgtataaaaaataataaagaagaaatct
tttttttttaaaagaaataattaagttttgtgattttattattattcaat
gtattatcacatttccacattgtgggaggacctcaaagcactcatctgtt
tctggcattgtacactccagacataaaattatggcaacgacaatgattct
gtcttagatgtcatcacgatgcctgtcctcctttcgttctgcggtgttct
gtctttgagagcaggtttggtggccttgcatatttgctgactgtggatgg
gaaagtgataggttcacatctcgaggcttgtagcttggctccaaggaagt
gcatttaaaaaagtatgctgttgagtactttctaggactttcctgtgctt
caattatattcctctaagtaattgaaatataaatggtactgagcat
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacgtgatcgtgttt
taagcctctccctgctactattccaaccttgagagagaactaccgaaatc
tgcaggtctccctcccagtcatcagaggactgaaccctgtgtgtagatgg
ctccagactcaaaggacctgcaaaagaggaaacagctcccacacagagcc
aagaataaggcctgttccaccagtgctgggccttaagcagatatttcaga
ccatcttaggccctggttagagtactgaagaccatcttgggcatcttgga
tggataatgtagatcgccttggaccttaagtgaaagctacagatagttgt
gggccttaggtatatactgcagaccatctgggccctaagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_35211360_35212449
seq2: B6Ng01-003M11.b_46_1141

seq1  GAATTCATGGGACAGGAAAGACTATGAAGACAGTGTATCTCTTGTCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGACAGGAAAGACTATGAAGACAGTGTATCTCTTGTCTGAA  50

seq1  CCCCATAAAGCTTGGATATTTAACAGTGAGATGGCCTGGCTCTATTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAAAGCTTGGATATTTAACAGTGAGATGGCCTGGCTCTATTCCAA  100

seq1  CCTATCATAGGATTCCTGGGATGTGTGTCAAAGACCAAGGAGCCCCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCATAGGATTCCTGGGATGTGTGTCAAAGACCAAGGAGCCCCAATG  150

seq1  AGGACCCAGCCCACTCCACTGTCTGCCGCTCCACCTCTTCATCTGTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCAGCCCACTCCACTGTCTGCCGCTCCACCTCTTCATCTGTTGAG  200

seq1  AACTGGATCTGATTCTCTATTTCCTGCTCTGGGTCCCAATTGCCTTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGATCTGATTCTCTATTTCCTGCTCTGGGTCCCAATTGCCTTGTTC  250

seq1  ACATTGTAGCTAATCTCAGCAGCTTCTTTCTCAAGCCCGACTTCCACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTAGCTAATCTCAGCAGCTTCTTTCTCAAGCCCGACTTCCACTGG  300

seq1  CACTGGCCTGGCTCATTGTTTTAGCAATCCAAACTTGGTTCACACACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCCTGGCTCATTGTTTTAGCAATCCAAACTTGGTTCACACACATA  350

seq1  CACACACACACACACACACACACACACACACACACACAGACACATAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACAGACACATAAGTG  400

seq1  TATTATTGTATGTTTTGTGATATTTGGATTAATATTTGTAACCCAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGTATGTTTTGTGATATTTGGATTAATATTTGTAACCCAATATT  450

seq1  GGTAAGATTAGAATAAAGAACTTGAATTTATGGTAAATTACTGCCATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGATTAGAATAAAGAACTTGAATTTATGGTAAATTACTGCCATTAA  500

seq1  AATCAGTAAACTTGGGGTGGAGAGATAGCTGAGTGGTTAAGATCTCTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTAAACTTGGGGTGGAGAGATAGCTGAGTGGTTAAGATCTCTGGC  550

seq1  TGAGCTTCCAGAGGACCCAGCTTCACTTTGCAGCATCCACAAGACAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTCCAGAGGACCCAGCTTCACTTTGCAGCATCCACAAGACAGCTC  600

seq1  ACAAATATCTGTAGTTCCAGTTGCAGGGGGTCTGACAGCCTCACACAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATCTGTAGTTCCAGTTGCAGGGGGTCTGACAGCCTCACACAGAC  650

seq1  ACACATGTAGGCAAAACACCAATGTATAAAAAATAATAAAGAAGAAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTAGGCAAAACACCAATGTATAAAAAATAATAAAGAAGAAATCT  700

seq1  TTTTTTTTAAAAAGAAATAATTAAGTTTTGTGATTTTATTATTATTCAAT  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAAAGAAATAATTAAGTTTTGTGATTTTATTATTATTCAAT  750

seq1  GTATTATCACATTTCCACATTGTGGGAGGACCTCAAAGCACTCATCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATCACATTTCCACATTGTGGGAGGACCTCAAAGCACTCATCTGTT  800

seq1  TCTGGCATTGTACACTCCAGACATAAAATTATGGCAACGACAATGATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATTGTACACTCCAGACATAAAATTATGGCAACGACAATGATTCT  850

seq1  GTCTTAGATGTCATCACGATGCCTGTCCTCCTTTCGTTCTGCGGTGTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGATGTCATCACGATGCCTGTCCTCCTTTCGTTCTGCGGTGTTCT  900

seq1  GTCTTTGAGAGCAGGTTTGGTGGCC-TGCATA-TTGCTGACTGTGGAT-G  947
      ||||||||||||||||||||||||| |||||| ||||||||||||||| |
seq2  GTCTTTGAGAGCAGGTTTGGTGGCCTTGCATATTTGCTGACTGTGGATGG  950

seq1  GAAAGTGATAGGTTCACATCTCGAGGCTTGTAGCTTGGCTCCAAGGAAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGATAGGTTCACATCTCGAGGCTTGTAGCTTGGCTCCAAGGAAGT  1000

seq1  GCATTTAAAAAAGTATGCTGTGAGGTAACTTCTAGGAC-TTCCTGTGCTT  1046
      |||||||||||||||||||||   |||  ||||||||| |||||||||||
seq2  GCATTTAAAAAAGTATGCTGTTGAGTACTTTCTAGGACTTTCCTGTGCTT  1050

seq1  CAATTATA-TCCCCTAAGTTATTTGAATATAAAT-GTACTGAGCAT  1090
      |||||||| ||| |||||| |||  ||||||||| |||||||||||
seq2  CAATTATATTCCTCTAAGTAATTGAAATATAAATGGTACTGAGCAT  1096

seq1: chr10_104053513_104054363
seq2: B6Ng01-003M11.g_69_706 (reverse)

seq1  GTGTTTAGCAAATTGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCT  50
      |||||||||||||| ||||||||||||||||||||||| ||||  |||||
seq2  GTGTTTAGCAAATTATATCTTATATCTTGGGTATCCTAGGTTT-GGGGCT  49

seq1  AATATCCACTTATCAGTGAGTACATATTGCGCGAGTTCCTTTGTGATTGG  100
      ||||||||||||||||||||||||||||| | ||||| |||||||| || 
seq2  AATATCCACTTATCAGTGAGTACATATTGTGTGAGTTTCTTTGTGAATGT  99

seq1  GTTACCGCACTCAGGATGATACTCTCCAGGTCCATCCATTTGCCTAGGAA  150
      |||||| ||||||||||||| | ||||||||||||||||||| |||||||
seq2  GTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAA  149

seq1  TTTCATAAATTCATTCTTTTTAATAGCTCCATTTACATTTAATTTAATTA  200
      |||||||||||||||||||||||||||                       
seq2  TTTCATAAATTCATTCTTTTTAATAGC-----------------------  176

seq1  ATGTAATTACAATTAATTAATTTATTAATTAAATAATTTAATAATTTAAT  250
                                                        
seq2  --------------------------------------------------  176

seq1  TGATAAATTAATTTAATTAATTAATTTAATTAATTAAATTAAATAATAAT  300
                                                        
seq2  --------------------------------------------------  176

seq1  TTAATAATAAATTAAATATTTTAAAATTAATAATAATTTTATAAGTAAAT  350
                                               | ||||   
seq2  -----------------------------------------TGAGTA---  182

seq1  AATTTAATTAATGTAATTTAATTAATGTAATTACATTACATTTAATAGCT  400
                                |||                   ||
seq2  --------------------------GTA-------------------CT  187

seq1  CCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGTTGAGGGG  450
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  CCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGG  237

seq1  CATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAA  500
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  CATCTAGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAA  287

seq1  TATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATA  550
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCATCTTCTGGATATA  337

seq1  TGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTT  600
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTT  387

seq1  CTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATC  650
      |||| |||||||||||| ||||||||||||||||||||||||||||| ||
seq2  CTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCACTC  437

seq1  CCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATC  700
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCACGCCAGCATC  487

seq1  TGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGG  537

seq1  AATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGA  587

seq1  ACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATT  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACATTTTTTCAGGTGTTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATT  637

seq1  C  851
      |
seq2  C  638