BAC Information

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BAC

Clone NameB6Ng01-004D08
Chromosome10 (Build37)
Map Location 8,482,312 - 8,643,696
singlet/doubletdoublet
Overlap geneSash1
Upstream geneKatna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046, Ust, LOC100039173
Downstream geneEG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004D08.bB6Ng01-004D08.g
ACCDH841685DH841686
length6791,028
definitionDH841685|Mus musculus domesticus DNA, BAC clone: B6Ng01-004D08, 5' end.DH841686|Mus musculus domesticus DNA, BAC clone: B6Ng01-004D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,643,020 - 8,643,696)(8,482,312 - 8,483,342)
sequence
gaattcaccccagatatttccattgtgagggccaataatctccctttggt
ttaaaccgatatgaatagctggataatgttggataacaacattatcaaag
gaaacctatgtaaattcacaccagtgacactcatttctgtaggacgcttc
tcactgatgcctaagtgccgtgcaacataatcatcatgtacatcaataag
tctctggcagattaatgtaacgtcttgagttttagtcgctgacattacta
aacaccatacacatgcacactctggcttttcacttcttgctgcatacaaa
tcgatcagctactgataagactttttttttcttcaaagtccataatatca
gtagatttatatgcagggaaatgagggaccaaagattggtcaacgaaatt
atcaccctcatttccacagggatgtgtcatcactgactgactaggacatg
gttgaaaaacagagattaatagcttgcccatactcgcttcaagcaaaatc
agtttaaagtagcctttaaaagggtgaaagattaatgcaaagaggaggca
ggagagtagggggtgggacaggggtgaggggcggagagcatacagcataa
ctgccttctttctacctctctagcctctgtgtttagatctgtgatatggt
tctgcctcatgggattggtatggggactt

gaattccagagaaagaaagaaagaacgcgagaatctgagcgaatccggga
cagagggctaacccttccgagtgactgaactctaaaacagatcgcttctg
cagatgggcttccgaacgctccctgaggggcgtggtcaccattgaaagtg
gacacctttccagggctatttttgaaattactatcatggagcttgtgatt
ctggtttttctccctgacttatcattttctccctctccccatcccccccc
caccccctttctgttttaatagccagagtaaatgtaggcgatttcccctt
tcctggggcttctaaaactgtcttcccaaattgttccgaccgtcatttca
gggcagctgagttctcgggcattctggaacagcaagcctggggactatgt
cacatgattgtttaatcttggggagtcccaggggagcaccaggcacatgc
tgttactgaaacaggacataggctaaacaagacagagctgaaaaatggaa
gaaagaagtctccatgacgtgtcccttcccgtggctcacctcactgagtt
aacccaccgtgcggtttgccctaatcacagcgcgctgcctcttccaccgt
gagggccttccttatccatctctttagaggcggatacagatacacaacac
acataaaacacctggcagccagagctcaccgtgagtgccaatctctgtct
ccttaaaatagcagaaggacttttgggaggaggtctagggcttacttaaa
cgggggtaacatttgagacccaagctcacaaaaggaaggtcctgctttgc
ccagagtctccagtttagttggcagcctggcagccggtctccccattttc
tgggtccctcacctgctcctcttccttccctttcctcccctttccttttc
ctagaaagcattgactctatgcccctcccttccaagtctgctgtccagaa
agcttctcttctacttttaactgaaacttttctcttttcttgcacaagat
tcgccataccttcccctggtactgcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_8643020_8643696
seq2: B6Ng01-004D08.b_45_722 (reverse)

seq1  AGT-CCCTTACCAATCCCATGAGGCAGAACCATATCACAGATCTAAACAC  49
      ||| ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCATACCAATCCCATGAGGCAGAACCATATCACAGATCTAAACAC  50

seq1  CGAGGCTAGAGAGGCTGAAAGAAGGCAGTTCTGCTGTATGCTCTCCGCCC  99
       |||||||||||||  |||||||||||||| |||||||||||||||||||
seq2  AGAGGCTAGAGAGGTAGAAAGAAGGCAGTTATGCTGTATGCTCTCCGCCC  100

seq1  CTCACCCCTGTCCCACCCCCTACTCTCCTGCCTCCTCTTTGCATTAATCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCCTGTCCCACCCCCTACTCTCCTGCCTCCTCTTTGCATTAATCT  150

seq1  TTCACCCTTTTAAAGGCTACTTTAAACTGATTTTGCTTGAAGCGAGTATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCTTTTAAAGGCTACTTTAAACTGATTTTGCTTGAAGCGAGTATG  200

seq1  GGCAAGCTATTAATCTCTGTTTTTCAACCATGTCCTAGTCAGTCAGTGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCTATTAATCTCTGTTTTTCAACCATGTCCTAGTCAGTCAGTGAT  250

seq1  GACACATCCCTGTGGAAATGAGGGTGATAATTTCGTTGACCAATCTTTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATCCCTGTGGAAATGAGGGTGATAATTTCGTTGACCAATCTTTGG  300

seq1  TCCCTCATTTCCCTGCATATAAATCTACTGATATTATGGACTTTGAAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATTTCCCTGCATATAAATCTACTGATATTATGGACTTTGAAGAA  350

seq1  AAAAAAAGTCTTATCAGTAGCTGATCGATTTGTATGCAGCAAGAAGTGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTCTTATCAGTAGCTGATCGATTTGTATGCAGCAAGAAGTGAA  400

seq1  AAGCCAGAGTGTGCATGTGTATGGTGTTTAGTAATGTCAGCGACTAAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGTGTGCATGTGTATGGTGTTTAGTAATGTCAGCGACTAAAAC  450

seq1  TCAAGACGTTACATTAATCTGCCAGAGACTTATTGATGTACATGATGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACGTTACATTAATCTGCCAGAGACTTATTGATGTACATGATGATT  500

seq1  ATGTTGCACGGCACTTAGGCATCAGTGAGAAGCGTCCTACAGAAATGAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCACGGCACTTAGGCATCAGTGAGAAGCGTCCTACAGAAATGAGT  550

seq1  GTCACTGGTGTGAATTTACATAGGTTTCCTTTGATAATGTTGTTATCCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGGTGTGAATTTACATAGGTTTCCTTTGATAATGTTGTTATCCAA  600

seq1  CATTATCCAGCTATTCATATCGGTTTAAACCAAAGGGAGATTATTGGCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCCAGCTATTCATATCGGTTTAAACCAAAGGGAGATTATTGGCCC  650

seq1  TCACAATGGAAATATCTGGGGTGAATTC  677
      ||||||||||||||||||||||||||||
seq2  TCACAATGGAAATATCTGGGGTGAATTC  678


seq1: chr10_8482312_8483342
seq2: B6Ng01-004D08.g_65_1092

seq1  GAATTCCAGAGAAAGAAAGAAAGAACGCGAGAATCTGAGCGAATCCGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGAAAGAAAGAAAGAACGCGAGAATCTGAGCGAATCCGGGA  50

seq1  CAGAGGGCTAACCCTTCCGAGTGACTGAACTCTAAAACAGATCGCTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGCTAACCCTTCCGAGTGACTGAACTCTAAAACAGATCGCTTCTG  100

seq1  CAGATGGGCTTCCGAACGCTCCCTGAGGGGCGTGGTCACCATTGAAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGGCTTCCGAACGCTCCCTGAGGGGCGTGGTCACCATTGAAAGTG  150

seq1  GACACCTTTCCAGGGCTATTTTTGAAATTACTATCATGGAGCTTGTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTTCCAGGGCTATTTTTGAAATTACTATCATGGAGCTTGTGATT  200

seq1  CTGGTTTTTCTCCCTGACTTATCATTTTCTCCCTCTCCCCATCCCCCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTTCTCCCTGACTTATCATTTTCTCCCTCTCCCCATCCCCCCCC  250

seq1  CACCCCCTTTCTGTTTTAATAGCCAGAGTAAATGTAGGCGATTTCCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTTTCTGTTTTAATAGCCAGAGTAAATGTAGGCGATTTCCCCTT  300

seq1  TCCTGGGGCTTCTAAAACTGTCTTCCCAAATTGTTCCGACCGTCATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGCTTCTAAAACTGTCTTCCCAAATTGTTCCGACCGTCATTTCA  350

seq1  GGGCAGCTGAGTTCTCGGGCATTCTGGAACAGCAAGCCTGGGGACTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCTGAGTTCTCGGGCATTCTGGAACAGCAAGCCTGGGGACTATGT  400

seq1  CACATGATTGTTTAATCTTGGGGAGTCCCAGGGGAGCACCAGGCACATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATTGTTTAATCTTGGGGAGTCCCAGGGGAGCACCAGGCACATGC  450

seq1  TGTTACTGAAACAGGACATAGGCTAAACAAGACAGAGCTGAAAAATGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTGAAACAGGACATAGGCTAAACAAGACAGAGCTGAAAAATGGAA  500

seq1  GAAAGAAGTCTCCATGACGTGTCCCTTCCCGTGGCTCACCTCACTGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGTCTCCATGACGTGTCCCTTCCCGTGGCTCACCTCACTGAGTT  550

seq1  AACCCACCGTGCGGTTTGCCCTAATCACAGCGCGCTGCCTCTTCCACCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCGTGCGGTTTGCCCTAATCACAGCGCGCTGCCTCTTCCACCGT  600

seq1  GAGGGCCTTCCTTATCCATCTCTTTAGAGGCGGATACAGATACACAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCTTCCTTATCCATCTCTTTAGAGGCGGATACAGATACACAACAC  650

seq1  ACATAAAACACCTGGCAGCCAGAGCTCACCGTGAGTGCCAATCTCTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACACCTGGCAGCCAGAGCTCACCGTGAGTGCCAATCTCTGTCT  700

seq1  CCTTAAAATAGCAGAAGGACTTTTGGGAGGAGGTCTAGGGCTTACTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAATAGCAGAAGGACTTTTGGGAGGAGGTCTAGGGCTTACTTAAA  750

seq1  CGGGGGTAACATTTGAGACCCAAAGCTCACAAAAGGAAGGTCCTGCTTTG  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGGGGGTAACATTTGAGACCC-AAGCTCACAAAAGGAAGGTCCTGCTTTG  799

seq1  CCCAGAGTCTCCAGTTTAGTTGGCAGCCTGGCAGCCGGTCTTCCCCATTT  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCCAGAGTCTCCAGTTTAGTTGGCAGCCTGGCAGCCGGTC-TCCCCATTT  848

seq1  TCTGGGTCCCTCACCTGCTCCTCTTCCCTCCCTTCCCTCCCCTTTCCTTT  900
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  TCTGGGTCCCTCACCTGCTCCTCTTCCTTCCCTTTCCTCCCCTTTCCTTT  898

seq1  CCCTAGAAAGCATTGACTCCATGCCCCTCCCCTCCAAGTCTGCTGTCCCA  950
       |||||||||||||||||| ||||||||||| ||||||||||||||||  
seq2  TCCTAGAAAGCATTGACTCTATGCCCCTCCCTTCCAAGTCTGCTGTCCAG  948

seq1  GAAGCCTCTCTTCTACTTTTAACTGAAACTTTCTCTTTTTCCTGCCACAA  1000
       |||| |||||||||||||||||||||||||| ||| ||| ||  |||||
seq2  AAAGCTTCTCTTCTACTTTTAACTGAAACTTT-TCTCTTTTCTTGCACAA  997

seq1  GGATTCGCCATAGCTTCCCCT-GTACTGCCTG  1031
       ||||||||||| |||||||| ||||||||||
seq2  -GATTCGCCATACCTTCCCCTGGTACTGCCTG  1028


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