BAC Information

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BAC

Clone NameB6Ng01-004G02
Chromosome10 (Build37)
Map Location 22,432,902 - 22,532,067
singlet/doubletdoublet
Overlap geneTbpl1
Upstream geneLOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12
Downstream geneTcf21, Eya4, Rps12, 1110021L09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004G02.bB6Ng01-004G02.g
ACCDH841806DH841807
length1,0421,002
definitionDH841806|Mus musculus domesticus DNA, BAC clone: B6Ng01-004G02, 5' end.DH841807|Mus musculus domesticus DNA, BAC clone: B6Ng01-004G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,531,023 - 22,532,067)(22,432,902 - 22,433,894)
sequence
gaattccacccttgccttcatattccggtgaccatcacctcaagaagaag
tgatctgctcacttgtctgctccgtttgggctgctccgtttgttgcgtcc
atctctactagctccatgagagcagggctgactgcgcatgcctggtttgc
tgccttcgcctggcacttagcatcgtgccaggcacagggaagcgttcaaa
gggtgtgcttcttggagacaggggcatctgttaataaatgccatgctgcg
cctccagtcagactggctcaaatatagttacacttcaatttagaatttgg
gaacgcaacacagagcttggtgtttaacagtcacatcgtccacaagaaaa
acgaaggcatattgagagagcattacctggaaaccctggtccacagtact
ttataacactgtgtgccaggtaaggtcacaataagcttggtgcctttgaa
gtgtacatttctcagcattctgtcagccctgagaggcaaccccctctaaa
catatctgatcatttgctaatgaatctcatctatagttgtttttttcttt
tctgtggtttctgtgaataaccaaagcttttagtacccttcaatcttatt
ctcaagcattcgtccccacatttgtccccactccaaagtccttcatcagt
ccccactcataaggaattacaaccttttctttccatttcaaaaaaaaaaa
gttcttctatatatttacggccctcctgacacgcagtgtgtgataaagga
acaccccaagcctcctgacaccaagtgtgagataaactaacatctctgac
tctaaatggagtgaatgtgcagtgattagattcacactatcctcctaaag
tcagcatcagatcccacaggagacagagttccacaggtttttgccatttc
agatgcccaaatctctgactcacagtctgtaagccagaggttcccattac
ccccctcctcagaaatttgccatatggttctctgacacagacaccattgc
tttgtcattttttttttgtgattgttgttttgattgtttttt
gaattcctttctcttttttaaaataaacgctgaaggccatcataatgtgc
tgcttcagcgtttttctaccttggggtatgttttcactgcctgtcaattc
tagtaacatttaaaactctgttagtgtttcttggatgagttattcaaagt
ttataattttataaacattcttttcttttctttttttaaccttactagtt
agcagctgaggaaatgctaacttaaaagaatgtgataacatttatcatgg
caaataactgtcctagctctaatataaacataacagtattctcttataat
ttaatatagaaatattctacaaaagatactgtgatagtgggttatcagaa
cctaatatataatatatatgtaacatgttttatatatatatatatatgtg
tatatatatatatatatatatatacacacacacacacacatatataatac
acacacacacacacacacacacacacacacatatataaaaaatggaattt
ctgccagttggtaatactgagctaagcaaagaataaatacagagaaattg
ctaataactaaaagtaactagtttaaaacagcataacacatactatgaaa
tatacttttattgtgtgtgtgtgcgcatgtgtgagcatgctttcaaaggt
caagaggcatcagctcccttggacctagaattataggtggttgtaagcta
ccaggtgggtgcttatatctgagctcaggtctctgcaagagcagtaagta
acacatacttaatccctgagccatctcgtcagcaccaagatatactttat
gaatcgtacacaacacaaaagcttagacagagctttcatgttgctagtgt
gtctagtgactcagattggtcagtggttaagagtactggcttgcttttct
cagttcccacatcggaggcttaccaacatctctttaactccaagcttcag
ggacttcttagtccttccccggcctctgtgcagcacacacttaactagta
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_22531023_22532067
seq2: B6Ng01-004G02.b_47_1088 (reverse)

seq1  AAAAAACAAAACAAAACAACAA----AAAAAAAAAATTGGACAAAGGCAA  46
      ||||||| || |||||||||||    |||||||||||  |||||||   |
seq2  AAAAAAC-AATCAAAACAACAATCACAAAAAAAAAAT--GACAAAG--CA  45

seq1  ATGGTGTCCTGTGTCAGGAGAACCATTATGGCAAATTTTCTGAGGA-GGG  95
      ||||||| |||||||| |||||||| ||||||||| |||||||||| |||
seq2  ATGGTGT-CTGTGTCA-GAGAACCA-TATGGCAAA-TTTCTGAGGAGGGG  91

seq1  GGTTATGGGAACCTCTGGCTTACAGACTGTGAGTCAGAGATTT-GGCATC  144
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTAATGGGAACCTCTGGCTTACAGACTGTGAGTCAGAGATTTGGGCATC  141

seq1  TGAAATGGCAAAAACCTGTGGAACTCTGTCTCTTGTGGGATCTGATGCTG  194
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGAAATGGCAAAAACCTGTGGAACTCTGTCTCCTGTGGGATCTGATGCTG  191

seq1  ACTTTAGGAGGATAGTGTGAATCTAATCACTGCACATTCACTCCATTTAG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGGAGGATAGTGTGAATCTAATCACTGCACATTCACTCCATTTAG  241

seq1  AGTCAGAGATGTTAGTTTATCTCACACTTGGTGTCAGGAGGCTTGGGGTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGATGTTAGTTTATCTCACACTTGGTGTCAGGAGGCTTGGGGTG  291

seq1  TTCCTTTATCACACACTGCGTGTCAGGAGGGCCGTAAATATATAGAAGAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTATCACACACTGCGTGTCAGGAGGGCCGTAAATATATAGAAGAA  341

seq1  CTTTTTTTTTTTGAAATGGAAAGAAAAGGTTGTAATTCCTTATGAGTGGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTGAAATGGAAAGAAAAGGTTGTAATTCCTTATGAGTGGG  391

seq1  GACTGATGAAGGACTTTGGAGTGGGGACAAATGTGGGGACGAATGCTTGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATGAAGGACTTTGGAGTGGGGACAAATGTGGGGACGAATGCTTGA  441

seq1  GAATAAGATTGAAGGGTACTAAAAGCTTTGGTTATTCACAGAAACCACAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGATTGAAGGGTACTAAAAGCTTTGGTTATTCACAGAAACCACAG  491

seq1  AAAAGAAAAAAACAACTATAGATGAGATTCATTAGCAAATGATCAGATAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAAACAACTATAGATGAGATTCATTAGCAAATGATCAGATAT  541

seq1  GTTTAGAGGGGGTTGCCTCTCAGGGCTGACAGAATGCTGAGAAATGTACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAGGGGGTTGCCTCTCAGGGCTGACAGAATGCTGAGAAATGTACA  591

seq1  CTTCAAAGGCACCAAGCTTATTGTGACCTTACCTGGCACACAGTGTTATA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGGCACCAAGCTTATTGTGACCTTACCTGGCACACAGTGTTATA  641

seq1  AAGTACTGTGGACCAGGGTTTCCAGGTAATGCTCTCTCAATATGCCTTCG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTGTGGACCAGGGTTTCCAGGTAATGCTCTCTCAATATGCCTTCG  691

seq1  TTTTTCTTGTGGACGATGTGACTGTTAAACACCAAGCTCTGTGTTGCGTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGTGGACGATGTGACTGTTAAACACCAAGCTCTGTGTTGCGTT  741

seq1  CCCAAATTCTAAATTGAAGTGTAACTATATTTGAGCCAGTCTGACTGGAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATTCTAAATTGAAGTGTAACTATATTTGAGCCAGTCTGACTGGAG  791

seq1  GCGCAGCATGGCATTTATTAACAGATGCCCCTGTCTCCAAGAAGCACACC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGCATGGCATTTATTAACAGATGCCCCTGTCTCCAAGAAGCACACC  841

seq1  CTTTGAACGCTTCCCTGTGCCTGGCACGATGCTAAGTGCCAGGCGAAGGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAACGCTTCCCTGTGCCTGGCACGATGCTAAGTGCCAGGCGAAGGC  891

seq1  AGCAAACCAGGCATGCGCAGTCAGCCCTGCTCTCATGGAGCTAGTAGAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACCAGGCATGCGCAGTCAGCCCTGCTCTCATGGAGCTAGTAGAGA  941

seq1  TGGACGCAACAAACGGAGCAGCCCAAACGGAGCAGACAAGTGAGCAGATC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGCAACAAACGGAGCAGCCCAAACGGAGCAGACAAGTGAGCAGATC  991

seq1  ACTTCTTCTTGAGGTGATGGTCACCGGAATATGAAGGCAAGGGTGGAATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCTTGAGGTGATGGTCACCGGAATATGAAGGCAAGGGTGGAATT  1041

seq1  C  1045
      |
seq2  C  1042

seq1: chr10_22432902_22433894
seq2: B6Ng01-004G02.g_66_1067

seq1  GAATTCCTTTCTCTTTTTTAAAATAAACGCTGAAGGCCATCATAATGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTCTTTTTTAAAATAAACGCTGAAGGCCATCATAATGTGC  50

seq1  TGCTTCAGCGTTTTTCTACCTTGGGGTATGTTTTCACTGCCTGTCAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGCGTTTTTCTACCTTGGGGTATGTTTTCACTGCCTGTCAATTC  100

seq1  TAGTAACATTTAAAACTCTGTTAGTGTTTCTTGGATGAGTTATTCAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACATTTAAAACTCTGTTAGTGTTTCTTGGATGAGTTATTCAAAGT  150

seq1  TTATAATTTTATAAACATTCTTTTCTTTTCTTTTTTTAACCTTACTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTTATAAACATTCTTTTCTTTTCTTTTTTTAACCTTACTAGTT  200

seq1  AGCAGCTGAGGAAATGCTAACTTAAAAGAATGTGATAACATTTATCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGAGGAAATGCTAACTTAAAAGAATGTGATAACATTTATCATGG  250

seq1  CAAATAACTGTCCTAGCTCTAATATAAACATAACAGTATTCTCTTATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACTGTCCTAGCTCTAATATAAACATAACAGTATTCTCTTATAAT  300

seq1  TTAATATAGAAATATTCTACAAAAGATACTGTGATAGTGGGTTATCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATAGAAATATTCTACAAAAGATACTGTGATAGTGGGTTATCAGAA  350

seq1  CCTAATATATAATATATATGTAACATGTTTTATATATATATATATATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATATAATATATATGTAACATGTTTTATATATATATATATATGTG  400

seq1  TATATATATATATATATATATATACACACACACACACACATATATAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATACACACACACACACACATATATAATAC  450

seq1  ACACACACACACACACACACACACACACACATATATAAAAAATGGAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACATATATAAAAAATGGAATTT  500

seq1  CTGCCAGTTGGTAATACTGAGCTAAGCAAAGAATAAATACAGAGAAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTTGGTAATACTGAGCTAAGCAAAGAATAAATACAGAGAAATTG  550

seq1  CTAATAACTAAAAGTAACTAGTTTAAAACAGCATAACACATACTATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAACTAAAAGTAACTAGTTTAAAACAGCATAACACATACTATGAAA  600

seq1  TATACTTTTATTGTGTGTGTGTGCGCATGTGTGAGCATGCTTTCAAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTTATTGTGTGTGTGTGCGCATGTGTGAGCATGCTTTCAAAGGT  650

seq1  CAAGAGGCATCAGCTCCCTTGGACCTAGAATTATAGGTGGTTGTAAGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGCATCAGCTCCCTTGGACCTAGAATTATAGGTGGTTGTAAGCTA  700

seq1  CCAGGTGGGTGCTTATATCTGAGCTCAGGTCTCTGCAAGAGCAGTAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGGGTGCTTATATCTGAGCTCAGGTCTCTGCAAGAGCAGTAAGTA  750

seq1  ACACATACTTAATCCCTGAGCCACCTCGTCAGCACCAAGATATACTTTAT  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACACATACTTAATCCCTGAGCCATCTCGTCAGCACCAAGATATACTTTAT  800

seq1  GAATCGTACACAACACAAAAGCTTAGACAGAGC-TTCATGTTGCTAGTGT  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATCGTACACAACACAAAAGCTTAGACAGAGCTTTCATGTTGCTAGTGT  850

seq1  GTCTAGTGACTCAGATTGGTCAGTGGTTAAGAGTACTGGC-TGCTCTTCT  898
      |||||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  GTCTAGTGACTCAGATTGGTCAGTGGTTAAGAGTACTGGCTTGCTTTTCT  900

seq1  CAGTTCCCACATCGGAGGCTTACCAACA--TCCTTAACTCC-AGCTTCAG  945
      ||||||||||||||||||||||||||||  || |||||||| ||||||||
seq2  CAGTTCCCACATCGGAGGCTTACCAACATCTCTTTAACTCCAAGCTTCAG  950

seq1  GGACT--CTAG--CCTCCCCGGCCTCTGTGCAGCACACACTTAACTAGTA  991
      |||||   |||  | |||||||||||||||||||||||||||||||||||
seq2  GGACTTCTTAGTCCTTCCCCGGCCTCTGTGCAGCACACACTTAACTAGTA  1000

seq1  TG  993
      ||
seq2  TG  1002