BAC Information

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BAC

Clone NameB6Ng01-004H14
Chromosome13 (Build37)10 (Build37)
Map Location 22,784,329 - 22,785,360104,053,911 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740
Downstream geneLOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004H14.bB6Ng01-004H14.g
ACCDH841874DH841875
length1,0431,005
definitionDH841874|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H14, 5' end.DH841875|Mus musculus domesticus DNA, BAC clone: B6Ng01-004H14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,784,329 - 22,785,360)(104,053,911 - 104,054,363)
sequence
gaattccaagtttccattacccaaaattctttatctgtttctcagtctat
ttcttcctatttagccactcaattcccaaatccttccccacatcacactg
aggaattctgctcctcaatacctgtatcatctctcacatttagtaacttt
accttccacagctttcttcctttggtatccctttcttatctgcatcttga
gtagtacaatttctagaatagcatttgacttcaaagctttataacttcaa
tttctacatcttaatatgttaagttgttatagtaaccattatgtgatttc
cctctgtgtgaatgtttactagatattttttaatacattcctcagtgtca
ggtcaaggtgtgtaacctttccagataaagccccacagttaaagcttagt
caccagaagatatcctggaaaagactctatgtgaaaaatttatgtaacca
ccaggttgcagccagggactgtgcccagtagaaccctgggttgcttccta
gaaaagtgggtacaagggtgctgttatcccattggatgaaccagggcatt
tctaacaccactgagggacctgagggcttctaaggtaatatagagcaccc
atggatgagctgttgttgatgagagagatagcagaggggattgatgagtt
gttaggtgctgtcctaagatctgtgaagtttttgagttatgaattcgcag
tatagctgcatgtagcacagtgatttgggacattgtgagcagggaccctc
ccatctaagaggtcatgggggtaggtgcaagcagcagttatgtcatcttg
ctttacaatctgcttcttctcctgtttcttttccaacctgtttgtcaggc
aggctgcttttgttctacaccagtccatactgattttaggacttagacct
aagtaggatgttattattcatgttttggagctcagttgcatttcccaggg
atttatgattagctttggacaggtctcccaactcacagatgctaaatgtc
ttatcctcacgatctcatgtgggcccttagactagcttgttcc
gaattctcacctgaggaataccgaatagcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacgggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatgcagaaaatgtggtacatctacacaatg
gagtactactcagctagtaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaactgatgatttcttatag
gtaccaggatagaagataaaatagtgattatattgattaggtttatctgt
acaaaacttcactaatagcttagttatgggctttaattctccatgaacct
gtggagctgtgacaggtaataaatttttagccaaataattcctcctaatg
gatgtgcatctaaacattctctgtgtgaacttcttgcttgatttatgatt
tgaatttatgtgtaaacttgtgatgaactttttaccatgtgttcatgtat
tctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22784329_22785360
seq2: B6Ng01-004H14.b_49_1074

seq1  GAATTCCAAGTTTCCATTACCCAAAATTCTTTATCTGTTTCTCAGTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTTTCCATTACCCAAAATTCTTTATCTGTTTCTCAGTCTAT  50

seq1  TTCTTCCTATTTAGCCACTCAATTCCCAAATCCTTCCCCACATCACACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTATTTAGCCACTCAATTCCCAAATCCTTCCCCACATCACACTG  100

seq1  AGGAATTCTGCTCCTCAATACCTGTATCATCTCTCACATTTAGTAACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTCTGCTCCTCAATACCTGTATCATCTCTCACATTTAGTAACTTT  150

seq1  ACCTTCCACAGCTTTCTTCCTTTGGTATCCCTTTCTTATCTGCATCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCACAGCTTTCTTCCTTTGGTATCCCTTTCTTATCTGCATCTTGA  200

seq1  GTAGTACAATTTCTAGAATAGCATTTGACTTCAAAGCTTTATAACTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTACAATTTCTAGAATAGCATTTGACTTCAAAGCTTTATAACTTCAA  250

seq1  TTTCTACATCTTAATATGTTAAGTTGTTATAGTAACCATTATGTGATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACATCTTAATATGTTAAGTTGTTATAGTAACCATTATGTGATTTC  300

seq1  CCTCTGTGTGAATGTTTACTAGATATTTTTTAATACATTCCTCAGTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGTGAATGTTTACTAGATATTTTTTAATACATTCCTCAGTGTCA  350

seq1  GGTCAAGGTGTGTAACCTTTCCAGATAAAGCCCCACAGTTAAAGCTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGGTGTGTAACCTTTCCAGATAAAGCCCCACAGTTAAAGCTTAGT  400

seq1  CACCAGAAGATATCCTGGAAAAGACTCTATGTGAAAAATTTATGTAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAGATATCCTGGAAAAGACTCTATGTGAAAAATTTATGTAACCA  450

seq1  CCAGGTTGCAGCCAGGGACTGTGCCCAGTAGAACCCTGGGTTGCTTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGCAGCCAGGGACTGTGCCCAGTAGAACCCTGGGTTGCTTCCTA  500

seq1  GAAAAGTGGGTACAAGGGTGCTGTTATCCCATTGGATGAACCAGGGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGGGTACAAGGGTGCTGTTATCCCATTGGATGAACCAGGGCATT  550

seq1  TCTAACACCACTGAGGGACCTGAGGGCTTCTAAGGTAATATAGAGCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACACCACTGAGGGACCTGAGGGCTTCTAAGGTAATATAGAGCACCC  600

seq1  ATGGATGAGCTGTTGTTGATGAGAGAGATAGCAGAGGGGATTGATGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGAGCTGTTGTTGATGAGAGAGATAGCAGAGGGGATTGATGAGTT  650

seq1  GTTAGGTGCTGTCCTAAGATCTGTGAAGTTTTTGAGTTATGAATTCGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTGCTGTCCTAAGATCTGTGAAGTTTTTGAGTTATGAATTCGCAG  700

seq1  TATAGCTGCATGTAGCACAGTGATTTGGGACATTGTGAGCAGGGACCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTGCATGTAGCACAGTGATTTGGGACATTGTGAGCAGGGACCCTC  750

seq1  CCATCTAAGAGGTCATGGGGGTAGGTGCAAGCAGCAGTTATGTCATCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAAGAGGTCATGGGGGTAGGTGCAAGCAGCAGTTATGTCATCTTG  800

seq1  CTTTACAATCTGCTTCTTCTCCTGTTTCTTTTCCAACCTGTTTGTCAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAATCTGCTTCTTCTCCTGTTTCTTTTCCAACCTGTTTGTCAGGC  850

seq1  AGGCTGC-TTTGTTCTACACCAGTCCATACTGATTTTAGGACTTAGACCT  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTTTTGTTCTACACCAGTCCATACTGATTTTAGGACTTAGACCT  900

seq1  AAGTAGGATGTTATTATTCATGTTTTGGAGCTCCAGTTGCATTTCCCAGG  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGTAGGATGTTATTATTCATGTTTTGGAGCT-CAGTTGCATTTCCCAGG  949

seq1  GATTTATGATTAGCTTTGGACAGGGTCTCCCAACTCACAGGATTGCCTTA  999
      |||||||||||||||||||||| |||||||||||||||||   |||  ||
seq2  GATTTATGATTAGCTTTGGACA-GGTCTCCCAACTCACAG--ATGC--TA  994

seq1  AATGTCTTTATCCTCACGATCTCATGTGGGCCC  1032
      |||||| ||||||||||||||||||||||||||
seq2  AATGTC-TTATCCTCACGATCTCATGTGGGCCC  1026

seq1: chr10_104053911_104054363
seq2: B6Ng01-004H14.g_68_520 (reverse)

seq1  CTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGTTGAGG  50
      |||||||||||| ||||||||||||||||| ||| |||||||||||||||
seq2  CTCCATTGTGTAGATGTACCACATTTTCTGCATCCATTCCTCTGTTGAGG  50

seq1  GGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATG  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATG  100

seq1  AATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATA  150
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACATAGTGGAGCATGTGTCCTTCTTACCCGTTGGGGCATCTTCTGGATA  150

seq1  TATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATT  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATT  200

seq1  TTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAA  250
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCAA  250

seq1  TCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCACGCCAGCA  300

seq1  TCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGT  350

seq1  GGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTT  400

seq1  GAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAA  450
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  GAACATTTTTTCAGGTGTTTCTCTGCTATTCGGTATTCCTCAGGTGAGAA  450

seq1  TTC  453
      |||
seq2  TTC  453