BAC Information

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BAC

Clone NameB6Ng01-004P11
Chromosome4 (Build37)10 (Build37)
Map Location 30,712,626 - 30,713,771109,665,221 - 109,665,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665185, LOC619906
Downstream geneLOC100040864, LOC100040891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004P11.bB6Ng01-004P11.g
ACCDH842232DH842233
length1,130935
definitionDH842232|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P11, 5' end.DH842233|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,712,626 - 30,713,771)(109,665,221 - 109,665,737)
sequence
gaattcatttgtttttcattgctaatttcatacttcagaataggcaagtt
ttaaagaaaggattgcctgtgctttgcagttctgggggtcaaggtcgagg
taccccatggtgatagccttcttgatcttggtgcagtacatcatctagta
ggaggcaaggtgtgtacatgtatctcctctgctcttttatgaaatataac
tcagattgctcacgtggcatatttaatttattctaaggataatgctctaa
atgacctaagacctggacagctggccatagcttttaatgattcacactac
tacaagacactagaagccttggtctcagcacatcaaaccttgggacaaac
cacatttaaattttagcaaggtattcactgtttctattttgtatggaatt
caattataacaaataacaaaataaatagtaatatgtaatatgtgtgttat
tactaaattggtcaagatgagtttggcttagttgtgacaattctacaaat
ttcaggggcataagaaatagagctgctacgtttgatcattaaagccctct
gtgagtcctgggtaaccacattcaactgttactggggaatcctttaatca
cgttctccctatatctcaatttagggctctttccatagtccacaatgaga
ctgaataaatagccaaagtttcaatacttactcctaaatactttagatcc
aagtgttatcatttgctgatacaataactaaagatcatcaacggccgagc
ttgagatgcacagagagtgcaagcatgcacatgctcatgcaggtgacaag
tggtgaagaactgaacacataaactgaagcacatctgacacattaggaca
ggaagaacttgctctgaagtgttagcctttaaaccgctttctgctttttc
agctctgtactgtttccagggttgttctggagagcatttattttttgtga
atcatactgtttatcgctaaatatgacttttttgtatatattttattact
atagctgactatgagaagagcattcaagatgacttatatagctttctaat
tagcatcaatatgggtgactaatacacaagtttattgggacaactctgat
tatgccttgatgtggaagaataaccattga
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcgtgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatatgttcttggattcagttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtacattctacttctatcttgtgaaaaagtttgtgcagaactgg
aattaggttttctttgaaggtctgatagaactctgcattaacttgtctgg
tcctgggcttttttttggctgggagactatttataactgcttctaattct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgcccatttcgtccaggatttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggattttgtccctgttccctctagtgagtctagctaagggtttattta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
ataattcttcttgtttccacttggttgatttcatccctgagtttgattat
ttctgccgtctactctcttgggtgaatttgcttccttttttttctagagc
tttagatgttttgtcagctgctagtatgtgctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_30712626_30713771
seq2: B6Ng01-004P11.b_47_1176 (reverse)

seq1  TCAATTTGTTATTTCTTCACATCATAGGCATAATTCAGAGTTGTCCCCAT  50
      |||| | ||||||  | ||||||| |||||||| ||||||||||||| ||
seq2  TCAA-TGGTTATTCTTCCACATCA-AGGCATAA-TCAGAGTTGTCCCAAT  47

seq1  AAAACTTTGTGGTATTAAGTCAACCCATATTGAATTGCTTAATTAGAAAG  100
      |||   |||| ||||| |||| |||||||||||  ||| |||||||||||
seq2  AAA--CTTGT-GTATT-AGTC-ACCCATATTGA--TGC-TAATTAGAAAG  89

seq1  CTATTATAAGGTCATCTTTGAATGCTCTTCTCATAAGTCAGCTATAGTAA  150
      ||| ||||| |||||| ||||||||||||||||| |||||||||||||||
seq2  CTA-TATAA-GTCATC-TTGAATGCTCTTCTCAT-AGTCAGCTATAGTAA  135

seq1  TAAAATATATAACAAAAAAGTCATAATTTAGCGATAAACAGTATGATTCA  200
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  TAAAATATAT-ACAAAAAAGTCAT-ATTTAGCGATAAACAGTATGATTCA  183

seq1  CAAAAAATAAATGCTCTCCAGAACAACCCTGGAAACAGTACAGAGCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATAAATGCTCTCCAGAACAACCCTGGAAACAGTACAGAGCTGAA  233

seq1  AAAGCAG-AAGCGGTTTAAAGGCTAACACTTCAGAGCAAGTTCTTCCTGT  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAAAGCGGTTTAAAGGCTAACACTTCAGAGCAAGTTCTTCCTGT  283

seq1  CCTAATGTGTCAGATGTGCTTCAGTTTATGTGTTCAGTTCTTCACCACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGTGTCAGATGTGCTTCAGTTTATGTGTTCAGTTCTTCACCACTT  333

seq1  GTCACCTGCATGAGCATGTGCATGCTTGCACTCTCTGTGCATCTCAAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTGCATGAGCATGTGCATGCTTGCACTCTCTGTGCATCTCAAGCT  383

seq1  CGGCCGTTGATGATCTTTAGTTATTGTATCAGCAAATGATAACACTTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGTTGATGATCTTTAGTTATTGTATCAGCAAATGATAACACTTGGA  433

seq1  TCTAAAGTATTTAGGAGTAAGTATTGAAACTTTGGCTATTTATTCAGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGTATTTAGGAGTAAGTATTGAAACTTTGGCTATTTATTCAGTCT  483

seq1  CATTGTGGACTATGGAAAGAGCCCTAAATTGAGATATAGGGAGAACGTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGACTATGGAAAGAGCCCTAAATTGAGATATAGGGAGAACGTGA  533

seq1  TTAAAGGATTCCCCAGTAACAGTTGAATGTGGTTACCCAGGACTCACAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGATTCCCCAGTAACAGTTGAATGTGGTTACCCAGGACTCACAGA  583

seq1  GGGCTTTAATGATCAAACGTAGCAGCTCTATTTCTTATGCCCCTGAAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTAATGATCAAACGTAGCAGCTCTATTTCTTATGCCCCTGAAATT  633

seq1  TGTAGAATTGTCACAACTAAGCCAAACTCATCTTGACCAATTTAGTAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATTGTCACAACTAAGCCAAACTCATCTTGACCAATTTAGTAATA  683

seq1  ACACACATATTACATATTACTATTTATTTTGTTATTTGTTATAATTGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATATTACATATTACTATTTATTTTGTTATTTGTTATAATTGAAT  733

seq1  TCCATACAAAATAGAAACAGTGAATACCTTGCTAAAATTTAAATGTGGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACAAAATAGAAACAGTGAATACCTTGCTAAAATTTAAATGTGGTT  783

seq1  TGTCCCAAGGTTTGATGTGCTGAGACCAAGGCTTCTAGTGTCTTGTAGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAAGGTTTGATGTGCTGAGACCAAGGCTTCTAGTGTCTTGTAGTA  833

seq1  GTGTGAATCATTAAAAGCTATGGCCAGCTGTCCAGGTCTTAGGTCATTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAATCATTAAAAGCTATGGCCAGCTGTCCAGGTCTTAGGTCATTTA  883

seq1  GAGCATTATCCTTAGAATAAATTAAATATGCCACGTGAGCAATCTGAGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTATCCTTAGAATAAATTAAATATGCCACGTGAGCAATCTGAGTT  933

seq1  ATATTTCATAAAAGAGCAGAGGAGATACATGTACACACCTTGCCTCCTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATAAAAGAGCAGAGGAGATACATGTACACACCTTGCCTCCTAC  983

seq1  TAGATGATGTACTGCACCAAGATCAAGAAGGCTATCACCATGGGGTACCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGATGTACTGCACCAAGATCAAGAAGGCTATCACCATGGGGTACCT  1033

seq1  CGACCTTGACCCCCAGAACTGCAAAGCACAGGCAATCCTTTCTTTAAAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTTGACCCCCAGAACTGCAAAGCACAGGCAATCCTTTCTTTAAAAC  1083

seq1  TTGCCTATTCTGAAGTATGAAATTAGCAATGAAAAACAAATGAATTC  1146
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTATTCTGAAGTATGAAATTAGCAATGAAAAACAAATGAATTC  1130

seq1: chr10_109665221_109665737
seq2: B6Ng01-004P11.g_68_584 (reverse)

seq1  AGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATAAATAGTCTCCCAGT  50
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  AGTCCCATATCCCCTAAAGAATTAGAAGCAGTTATAAATAGTCTCCCAGC  50

seq1  C-AAAAAAAGCCCAGGACCAGACTGGTTTAGTGCAGAGTTCTATCAGACC  99
      | |||||||||||||||||||||  | ||| |||||||||||||||||||
seq2  CAAAAAAAAGCCCAGGACCAGACAAG-TTAATGCAGAGTTCTATCAGACC  99

seq1  TTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTTTTTCACAAGATAGA  149
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAAAACCTAATTCCAGTTCTGCACAAACTTTTTCACAAGATAGA  149

seq1  AGTAGAAAGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGA  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAATGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGA  199

seq1  TACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATT  249

seq1  TCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCG  299
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACTG  299

seq1  AATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTA  349

seq1  TTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATC  399

seq1  CACTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGA  449
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGA  449

seq1  TGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTCT  499

seq1  TGGAAAGATCAGGAATTC  517
      ||||||||||||||||||
seq2  TGGAAAGATCAGGAATTC  517