BAC Information

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BAC

Clone NameB6Ng01-005D01
Chromosome10 (Build37)
Map Location 111,823,999 - 111,824,951
singlet/doubletsinglet
Overlap geneKcnc2
Upstream geneNap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2
Downstream geneLOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005D01.bB6Ng01-005D01.g
ACCDH842394DH842395
length952807
definitionDH842394|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D01, 5' end.DH842395|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagatactctgtactctaccttcctgatgctgggattacaggcgt
ggaccaccaggcctgttttgtgtgtctctgggagttcatgcatgctagca
agtcctctgcttaatatccacatccttagccctgggtgtaagttcttaaa
tcacaatcatccatcagtggcctctggtagttcaggtatttttgagtgct
acttgattcttttaaagaattcacctcatcttggaaattcagagtagttt
ttcagggtgtgtttttcctcttatcaggacgtctttcctaggacaggatg
agcccttcaatctgcaactcaagggtttcctcagttcagaaagcgttctg
cctattgttggcttgattattccctctttccatctgttcattttctttca
tctgaaattctcgttatttgcatatcaaacctcctgtattttcctttaga
ataaacttgtctcttgcagacttttgagtctcatttattctttcttatat
tctaaggtattccttcccatagttctttgctaaaatcttaaaaattttaa
tccaagaattgaacccaggtagaattgttcctctgatagaacagccagtg
ctcttaaccactgagccatttgctaacccttgttgttaggaattaggaaa
ggctgaaagaagctgacgagaagggcaatgctgtaggaggaccagccatc
ttaattaatctggaccccccgagatctctcaaacactggactaccaaaca
gacagcatacaccagctgatatgaggcccccaacacacatacacatacag
tagaggacttccagggtctctgttcatcagagatgatgtacctaaccctc
aagagactggaggccccaggaagtttagaggtcaggttgggtgagagtgg
aggcatctacttggagactggtgtatgggggagagactggaatgtgatcc
ag

gttataggagaggggtttccggccggaatttttcacttttgttggaatac
tgaatggcagagaagcacctgaaaaaaatgttcatcttccttaatcatca
gagaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcaga
atggctaagatcaaaaattcaggtgacagcagatactggcaaggatgtgg
agaaagaggaacactcctctattgttgctgggattgcaagcttgtacgac
cactctggaaatcagtctggaggttcctcagaaaattggacatagtacta
ccgaaggatcccgcaatacctctcctgggcatatatccagaagatgtccc
aatcggtaagaaggacacatgctccactatgttcatagcagccttattta
taatagccagaagctggaaagaacccagatgcccctcaacagaggaatgg
atacagaaaatgtggtacatttacacaatggagtactactcagctattaa
aaagaatgaacttatgaaattcctaggcaaatggatgtatctggaggata
tcatcctgagtgaggtaacccaatcacaaaggaactcacacaatatgtac
tcactgataagtggatattagcccagaaacttttggatacccaagatata
agatacaattttgctaaagcgcatgaaactcaagaagaacgaagaccaaa
gtgtggacactttgccccttcttagaattgggaacgaaacacccatggaa
ggagttacagagacaaagtttggagctgtgacaaaaggatgggaccatct
agagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_111823999_111824951
seq2: B6Ng01-005D01.b_48_999

seq1  GAATTCAGATACTCTGTACTCTACCTTCCTGATGCTGGGATTACAGGCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATACTCTGTACTCTACCTTCCTGATGCTGGGATTACAGGCGT  50

seq1  GGACCACCAGGCCTGTTTTGTGTGTCTCTGGGAGTTCATGCATGCTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACCAGGCCTGTTTTGTGTGTCTCTGGGAGTTCATGCATGCTAGCA  100

seq1  AGTCCTCTGCTTAATATCCACATCCTTAGCCCTGGGTGTAAGTTCTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTGCTTAATATCCACATCCTTAGCCCTGGGTGTAAGTTCTTAAA  150

seq1  TCACAATCATCCATCAGTGGCCTCTGGTAGTTCAGGTATTTTTGAGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCATCCATCAGTGGCCTCTGGTAGTTCAGGTATTTTTGAGTGCT  200

seq1  ACTTGATTCTTTTAAAGAATTCACCTCATCTTGGAAATTCAGAGTAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATTCTTTTAAAGAATTCACCTCATCTTGGAAATTCAGAGTAGTTT  250

seq1  TTCAGGGTGTGTTTTTCCTCTTATCAGGACGTCTTTCCTAGGACAGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTGTGTTTTTCCTCTTATCAGGACGTCTTTCCTAGGACAGGATG  300

seq1  AGCCCTTCAATCTGCAACTCAAGGGTTTCCTCAGTTCAGAAAGCGTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTCAATCTGCAACTCAAGGGTTTCCTCAGTTCAGAAAGCGTTCTG  350

seq1  CCTATTGTTGGCTTGATTATTCCCTCTTTCCATCTGTTCATTTTCTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGTTGGCTTGATTATTCCCTCTTTCCATCTGTTCATTTTCTTTCA  400

seq1  TCTGAAATTCTCGTTATTTGCATATCAAACCTCCTGTATTTTCCTTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATTCTCGTTATTTGCATATCAAACCTCCTGTATTTTCCTTTAGA  450

seq1  ATAAACTTGTCTCTTGCAGACTTTTGAGTCTCATTTATTCTTTCTTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTGTCTCTTGCAGACTTTTGAGTCTCATTTATTCTTTCTTATAT  500

seq1  TCTAAGGTATTCCTTCCCATAGTTCTTTGCTAAAATCTTAAAAATTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGTATTCCTTCCCATAGTTCTTTGCTAAAATCTTAAAAATTTTAA  550

seq1  TCCAAGAATTGAACCCAGGTAGAATTGTTCCTCTGATAGAACAGCCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAATTGAACCCAGGTAGAATTGTTCCTCTGATAGAACAGCCAGTG  600

seq1  CTCTTAACCACTGAGCCATTTGCTAACCCTTGTTGTTAGGAATTAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACCACTGAGCCATTTGCTAACCCTTGTTGTTAGGAATTAGGAAA  650

seq1  GGCTGAAAGAAGCTGACGAGAAGGGCAATGCTGTAGGAGGACCAGCCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAAGAAGCTGACGAGAAGGGCAATGCTGTAGGAGGACCAGCCATC  700

seq1  TTAATTAATCTGGACCCCCCGAGATCTCTCAAACACTGGACTACCAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAATCTGGACCCCCCGAGATCTCTCAAACACTGGACTACCAAACA  750

seq1  GACAGCATACACCAGCTGATATGAGGCCCCCAACACACATACACATACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCATACACCAGCTGATATGAGGCCCCCAACACACATACACATACAG  800

seq1  TAGAGGACTTCCA-GGTCTCTGTTCATTCAGAGATGATGTACCTAACCCT  849
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  TAGAGGACTTCCAGGGTCTCTGTTCA-TCAGAGATGATGTACCTAACCCT  849

seq1  CAAGAGACTGGAGGCCCCAGGAAGTTTAGAGGTCAGGTTGGGTGAGAGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAGAGACTGGAGGCCCCAGGAAGTTTAGAGGTCAGGTTGGGTGAGA-GT  898

seq1  GGAGGCATCTACTTGGAGACTGGTGTATGGGGGAGAGACTGGAATGTGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCATCTACTTGGAGACTGGTGTATGGGGGAGAGACTGGAATGTGAT  948

seq1  CCAG  953
      ||||
seq2  CCAG  952


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