BAC Information

Click to search

BAC

Clone NameB6Ng01-005D11
Chromosome10 (Build37)
Map Location 89,839,490 - 89,988,368
singlet/doubletdoublet
Overlap geneAnks1b
Upstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039, LOC544719
Downstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005D11.bB6Ng01-005D11.g
ACCDH842411DH842412
length1,130986
definitionDH842411|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D11, 5' end.DH842412|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,839,490 - 89,840,819)(89,987,382 - 89,988,368)
sequence
gaattccatctgctgagcagcagctttcaaaggttggagtgaactgtgac
agagatgtatggtcaagctgtccatggtcctgatttagatcagctaatgg
gttacgaggaaagcacctaggcttcaaagaatcacacctattccagagcc
aaggatgtagtttctgcattatacactcttcttggatatcaatcaggact
attgttggtcttcatttcctctattagcagatatatctatggtctctttt
ataagtccacataatcaggagttgactatacagagctaacaatagattgc
agattctcttctgggaagcacataggcgcacacaaagggagcattattag
ccaaacgaatatctccatccctggtgattagcattttgagaggctgttgt
cttagagcaaatatttagatcatatatcgcgtaacttctatgtagctttg
tgtttcttctaatcttagtactaagtaaatagtacttgtttaaatttgaa
gggaatttctactctattttagttatcttagcatcagataggacagttcc
tagtccagtgatgtggtgtagaccatcaatttgcagctgtgctttatttc
tgctattagctatacttttctagaaagggcaacattataataaatgtgtc
aagttctataagtagtttgctatttactaataacacatttgctcccagaa
attgctaataggaaagattaatacaaggatatcaaacacaaagggaacct
gaattgttcttttattccccacacgcttgatatattacctttgcagcagc
aattattctgtaaactttaaaattcatttaatctatttacctaaaattgg
ctctctgttattaaataagaactgatgttctattttagcaacctgaagca
tgaattactgtggttggagccttaattattggtgggtatgaatgtgtagc
cgttgcttttctcatgctcagacagacatcggaccaaggacttgaggatg
ggctacttcaatttaagttattttatgtccacgtggaatgtgtgtttgcc
tgcatgtagtgtgctccatcccatgcattttctggagccagagtaggtca
cagattcctggaacacaggcttctgaaaga
gaattcttttataatgttaaaaaaatgtgcttgctgtctatctttaagaa
tcttggggctggggtcatgagatgctgatttaagggataatcgaagggga
ccctggggtaataactgaattgatatgtaaataaaagactgggattttga
tctgaaagagatgagctatcaagagagtttttagaagagaaagctgtctc
gagcagaacatagagagaacagtctatctggaaagttgtctcaagcagaa
cataggctgtcagcttttaacccatgatttgacttcaagttgtttgtttt
gctcctctcagataccccttcctcagaacccttctccaagcagagactgg
cccttgggaaataagccaatagctaggctctgtagaagagtaggaaccta
attttgataagtggtaactagcagatgacttaattacacagagcagcctg
tcctgcagtgtccttcagtactctccactagcataccttagtgcttagaa
accctcttgcttcagcattaaaggtcatctctcacccattatgacattag
tgtagaattcagtcttccaggcctgtttacctctccttaccataactttt
attttcatattcgggtgggccatatcatgttacaaattgtttctatgaaa
accaaaaatgaacaataaaagaaatgccttgtttctcctcaccatcaaat
gagatttttttaaatatatatttattttttattcctcccagaataaggga
ggagtgaaagagaaatgatttacagcaagtgacaggggtagctcagattt
cttgtagatcaattacagacctcactgaagatttaggaattttttagtgc
tctagtaaaaccagcagtctcagtctgtggagcctggcctatgccctggg
cattggtgttatcatctacttcctagacagtctttcgtttaaaggctgtg
atttgagcagagtctcatagaagatccagaagaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_89839490_89840819
seq2: B6Ng01-005D11.b_48_1177

seq1  GAATTCCATCTGCTGAGCAGCAGCTTTCAAAGGTTGGAGTGAACTGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTGCTGAGCAGCAGCTTTCAAAGGTTGGAGTGAACTGTGAC  50

seq1  AGAGATGTATGGTCAAGCTGTCCATGGTCCTGATTTAGATCAGCTAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTATGGTCAAGCTGTCCATGGTCCTGATTTAGATCAGCTAATGG  100

seq1  GTTACGAGGAAAGCACCTAGGCTTCAAAGAATCACACCTATTCCAGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGAGGAAAGCACCTAGGCTTCAAAGAATCACACCTATTCCAGAGCC  150

seq1  AAGGATGTAGTTTCTGCATTATACACTCTTCTTGGATATCAATCAGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTAGTTTCTGCATTATACACTCTTCTTGGATATCAATCAGGACT  200

seq1  ATTGTTGGTCTTCATTTCCTCTATTAGCAGATATATCTATGGTCTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGTCTTCATTTCCTCTATTAGCAGATATATCTATGGTCTCTTTT  250

seq1  ATAAGTCCACATAATCAGGAGTTGACTATACAGAGCTAACAATAGATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCCACATAATCAGGAGTTGACTATACAGAGCTAACAATAGATTGC  300

seq1  AGATTCTCTTCTGGGAAGCACATAGGCGCACACAAAGGGAGCATTATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCTTCTGGGAAGCACATAGGCGCACACAAAGGGAGCATTATTAG  350

seq1  CCAAACGAATATCTCCATCCCTGGTGATTAGCATTTTGAGAGGCTGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACGAATATCTCCATCCCTGGTGATTAGCATTTTGAGAGGCTGTTGT  400

seq1  CTTAGAGCAAATATTTAGATCATATATCGCGTAACTTCTATGTAGCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGCAAATATTTAGATCATATATCGCGTAACTTCTATGTAGCTTTG  450

seq1  TGTTTCTTCTAATCTTAGTACTAAGTAAATAGTACTTGTTTAAATTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTCTAATCTTAGTACTAAGTAAATAGTACTTGTTTAAATTTGAA  500

seq1  GGGAATTTCTACTCTATTTTAGTTATCTTAGCATCAGATAGGACAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTTCTACTCTATTTTAGTTATCTTAGCATCAGATAGGACAGTTCC  550

seq1  TAGTCCAGTGATGTGGTGTAGACCATCAATTTGCAGCTGTGCTTTATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAGTGATGTGGTGTAGACCATCAATTTGCAGCTGTGCTTTATTTC  600

seq1  TGCTATTAGCTATACTTTTCTAGAAAGGGCAACATTATAATAAATGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTAGCTATACTTTTCTAGAAAGGGCAACATTATAATAAATGTGTC  650

seq1  AAGTTCTATAAGTAGTTTGCTATTTACTAATAACACATTTGCTCCCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTATAAGTAGTTTGCTATTTACTAATAACACATTTGCTCCCAGAA  700

seq1  ATTGCTAATAGGAAAGATTAATACAAGGATATCAAACACAAAGGGAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAATAGGAAAGATTAATACAAGGATATCAAACACAAAGGGAACCT  750

seq1  GAATTGTTCTTTTATTCCCCACACGCTTGATATATTACCTTTGCAGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTTCTTTTATTCCCCACACGCTTGATATATTACCTTTGCAGCAGC  800

seq1  AATTATTCTGTAAACTTTAAAATTCATTTAATCTATTTACCTAAAATTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCTGTAAACTTTAAAATTCATTTAATCTATTTACCTAAAATTGG  850

seq1  CTCTCTGTTATTAAATAAGAACTGATGTTCTATTTTAGCAACCTGAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTTATTAAATAAGAACTGATGTTCTATTTTAGCAACCTGAAGCA  900

seq1  TGAATTACTGTGGTTGGAGCCTTAATTATTGGTTGGTTATGAATGTGTAG  950
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  TGAATTACTGTGGTTGGAGCCTTAATTATTGG-TGGGTATGAATGTGTAG  949

seq1  CCGTTGCTTTTCTCATTGCTCAGACAAGACATCGGACCAAGGGACTTGAG  1000
      ||||||||||||||| ||||||||| |||||||||||||| |||||||||
seq2  CCGTTGCTTTTCTCA-TGCTCAGAC-AGACATCGGACCAA-GGACTTGAG  996

seq1  GATGGGCTTACTTCAATTTTAAGTTTATTTTTATGT-CACGT-GTATGTG  1048
      ||||||| |||||||| ||||||||   |||||||| ||||| | |||||
seq2  GATGGGC-TACTTCAA-TTTAAGTT--ATTTTATGTCCACGTGGAATGTG  1042

seq1  TGTTTGCCTGCATGTATGTGTGCT-CATCACATGCA-TTTCTGAGGCCCA  1096
      |||||||||||||||| ||||||| |||| |||||| |||||| |  |||
seq2  TGTTTGCCTGCATGTA-GTGTGCTCCATCCCATGCATTTTCTG-GAGCCA  1090

seq1  GAGTAGGTCACCAGA-TCCT-GAACACAGGTCATCTGAAAGAGTAATGCT  1144
      |||||||||| |||| |||| ||||||||| | |||||||||        
seq2  GAGTAGGTCA-CAGATTCCTGGAACACAGG-CTTCTGAAAGA--------  1130

seq1  TTGTTGTTGTTGTTGTTGTTTGACTTTTTTATATTTTCTGGACAGAGGTT  1194
                                                        
seq2  --------------------------------------------------  1130

seq1  TACTTTGTAATCCTGGCTGGGAACTTGCTATATAAACCCAATTGATCTTC  1244
                                                        
seq2  --------------------------------------------------  1130

seq1  AACTCATAGAGACCTCTAGCTCTTGAGTGCTGGGATTAAATATGTGAGCC  1294
                                                        
seq2  --------------------------------------------------  1130

seq1  TCCACACCTGGAATGAGACAAGTAACTTCTGAAAGA  1330
                                          
seq2  ------------------------------------  1130

seq1: chr10_89987382_89988368
seq2: B6Ng01-005D11.g_66_1051 (reverse)

seq1  CTTTCTTCATAGAATCTTCTATTGAAAACTCTGCTCAAATCACAGCCTTC  50
      ||||||||   | |||||||||   | |||||||||||||||||||||| 
seq2  CTTTCTTC--TGGATCTTCTAT--GAGACTCTGCTCAAATCACAGCCTT-  45

seq1  TTAACGAAAGACTGTCTAAGGAAGTAGATGATAGC-CCAATG-CCAGGGC  98
      | ||||||||||||||| ||||||||||||||| | |||||| |||||||
seq2  TAAACGAAAGACTGTCT-AGGAAGTAGATGATAACACCAATGCCCAGGGC  94

seq1  ATTGGCCAGGCTTCACAGACTGAGACTGCTGGTTTTACTAGAGCACT-AA  147
      || ||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  ATAGGCCAGGCTCCACAGACTGAGACTGCTGGTTTTACTAGAGCACTAAA  144

seq1  AAATTTCTAAATCTTCAGTGAGGTCTGTAATTGATCTAC-AGAAATCTGA  196
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAATTCCTAAATCTTCAGTGAGGTCTGTAATTGATCTACAAGAAATCTGA  194

seq1  GCTACCCCTGTCACTTGCTGTAAATCATTTCTCTTTCACTCCTCCCTTAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCCTGTCACTTGCTGTAAATCATTTCTCTTTCACTCCTCCCTTAT  244

seq1  TCTGGGAGGAATAAAAATAAAATATATATTTAAAAAAATCTCATTTGATG  296
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  TCTGGGAGGAATAAAAAATAAATATATATTTAAAAAAATCTCATTTGATG  294

seq1  GTGAGGAGAAACAAGGCATTTCTTTTATTGTTCATTTTTGGTTTTCATAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGAAACAAGGCATTTCTTTTATTGTTCATTTTTGGTTTTCATAG  344

seq1  AAAC-ATTTGTAACATGATATGGCCCACCCGAATATGAAAATAAAAGTTA  395
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTTGTAACATGATATGGCCCACCCGAATATGAAAATAAAAGTTA  394

seq1  TGGTAAGGAGAGGTAAACAGGCCTGGAAGACTGAATTCTACACTAATGTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGGAGAGGTAAACAGGCCTGGAAGACTGAATTCTACACTAATGTC  444

seq1  ATAATGGGTGAGAGATGACCTTTAATGCTGAAGCAAGAGGGTTTCTAAGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGGTGAGAGATGACCTTTAATGCTGAAGCAAGAGGGTTTCTAAGC  494

seq1  ACTAAGGTATGCTAGTGGAGAGTACTGAAGGACACTGCAGGACAGGCTGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTATGCTAGTGGAGAGTACTGAAGGACACTGCAGGACAGGCTGC  544

seq1  TCTGTGTAATTAAGTCATCTGCTAGTTACCACTTATCAAAATTAGGTTCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAATTAAGTCATCTGCTAGTTACCACTTATCAAAATTAGGTTCC  594

seq1  TACTCTTCTACAGAGCCTAGCTATTGGCTTATTTCCCAAGGGCCAGTCTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCTACAGAGCCTAGCTATTGGCTTATTTCCCAAGGGCCAGTCTC  644

seq1  TGCTTGGAGAAGGGTTCTGAGGAAGGGGTATCTGAGAGGAGCAAAACAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGAGAAGGGTTCTGAGGAAGGGGTATCTGAGAGGAGCAAAACAAA  694

seq1  CAACTTGAAGTCAAATCATGGGTTAAAAGCTGACAGCCTATGTTCTGCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGAAGTCAAATCATGGGTTAAAAGCTGACAGCCTATGTTCTGCTT  744

seq1  GAGACAACTTTCCAGATAGACTGTTCTCTCTATGTTCTGCTCGAGACAGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAACTTTCCAGATAGACTGTTCTCTCTATGTTCTGCTCGAGACAGC  794

seq1  TTTCTCTTCTAAAAACTCTCTTGATAGCTCATCTCTTTCAGATCAAAATC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCTAAAAACTCTCTTGATAGCTCATCTCTTTCAGATCAAAATC  844

seq1  CCAGTCTTTTATTTACATATCAATTCAGTTATTACCCCAGGGTCCCCTTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTTTATTTACATATCAATTCAGTTATTACCCCAGGGTCCCCTTC  894

seq1  GATTATCCCTTAAATCAGCATCTCATGACCCCAGCCCCAAGATTCTTAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCCCTTAAATCAGCATCTCATGACCCCAGCCCCAAGATTCTTAAA  944

seq1  GATAGACAGCAAGCACATTTTTTTAACATTATAAAAGAATTC  987
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACAGCAAGCACATTTTTTTAACATTATAAAAGAATTC  986