BAC Information

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BAC

Clone NameB6Ng01-005D12
Chromosome10 (Build37)
Map Location 18,291,077 - 18,449,548
singlet/doubletdoublet
Overlap geneD10Bwg1379e
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729
Downstream geneEG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005D12.bB6Ng01-005D12.g
ACCDH842413DH842414
length1,1951,036
definitionDH842413|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D12, 5' end.DH842414|Mus musculus domesticus DNA, BAC clone: B6Ng01-005D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,448,313 - 18,449,548)(18,291,077 - 18,292,118)
sequence
gaattctggaaactcttcagagggtatagaaacccaccaacagtttccca
actctcagggccttagcatttatataccctgggaagactgcccagaattc
cagatgtcacatactcacaagttcttatgaggacttggctatttgggtac
ctgactattcagataatttgtcttatctgaaaattttcagactttacatt
ttctcttcttcatctgttaaaagggtaggagttcatgcctgagacatggg
ccttttgttaggattttatttgttatttgtaatggctgcttctcccagat
gggtcttgatctgtaggccattccctgcagttgctcttgtcagagagaca
ttcccagtgtcctctgccccttattgctctgtctttccatctgcccagtt
tttcttcttgtcagtgaattgcagaccccatatttggatagcagtgaatt
tgaacactctaattggcatggctctatgtgaatctacacaactatctaaa
taagcccagatacctcaggactctattacattggtggatctggctggttt
tcagacttccaatcgtatcttgcttgtcagatttccacagagattctcta
ttttgagatcaggccaagttatacagttagatcctgtctttaaaagattt
ttaaatcataatttttgggtcaatcttgattttacatgggatgttaacat
ttagtttcctgagatgttattgatcccttagactgtgtctaaggctagtg
tgaaggttttcaccccctctaggtctagtcctgcactctcactaccagga
agattccacggctactgggtgtccactttcttgatcagccttctgcagcc
atgtttagtaaaacttcctgtcccttgtagtgtttttaaggtactttcta
gttttattacatttctgagagccactcctaagttgaaataaagcattctt
gccatggtgctcatgatggtttgagtagtttgcccccatagatgagtgct
tgccataggagtgcactgtagaggtgtgacatactggagagtgtggcttg
ttgaagaagtacatcacttggaagtggctgagcttctattctcaagctct
acagtatgaactgtctcctctgccttcctgccagaaagctcaggctcttt
gatcagatagatctcagtcttcagaccagttgcctggagctgcca
ttaattcagggtggtctgataagatacaaggagttattctaattttcttg
tatttgttggggctgtgctgtgagattaggaggtggagagaattggtttc
ttatcagagctgcaggttttgctcaagtctcctgggtttgggaataagac
aaaaggtattaaattggcacgcataattctggggttcatggcatgagctg
ggacaccactaagttcccaaagctgacccagacaaaagctaggtggcagg
gatttaccagctcatctcaaaggcttctctaccttggagaatttgagctc
agaggtgctgggagcccctgctgtgcaaagagacaagcggctcagaaagc
aaagcggcagatggtagtggctgcttacctcctacaatcagataagtaaa
gaatagagagaaatgaggtttgtttaagtgtttaaacaaattaggcttga
actcactattaaaaatgaatttgaaaatttccaaatggaaaacacatgct
gcgacataaaattaggaggtggggagaattggtcttttagcagagttgct
cggtttttgtctagggcatgtgggtttgagacaaggacaaagggtgtgct
aaattggcactcctaattctggggttcttggtttaaggccgagatatgcc
cagactaacccagggacatgggggcaggctaaaggttcaggcagaggatc
tgtcctgttctgggctgctgcagagagcttaagccattgatgctgagagc
tcttgctgagaagggaggctgaagacagcacgcttgaataagatgggaat
aaggaaagttgcgttgtttaggttggaaggataagcctgagaataggctc
atacagaaatataggaagggaaatttaattgaagctaattatacaggaaa
ggatgttatttcaagttatataaataaaggggatatatatatatatcaca
gatactaatctcttacaggagaggaataaagggaattgcattgtttaagg
atagaacggagaaatatgggaactggtttaagtgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18448313_18449548
seq2: B6Ng01-005D12.b_47_1241 (reverse)

seq1  TGGCAGCATCCAGGCAGACTTGGTGCTGGAGGAGCTGAGAGTTCTATATC  50
      ||||||| |||||||| || |||| ||| ||   ||||||  |||||   
seq2  TGGCAGC-TCCAGGCA-AC-TGGT-CTGAAG--ACTGAGA--TCTAT---  39

seq1  TTGATCAAAAGGAAGCCAGAAGACTCTTCT-GCAGGCAGCCAGGAGGAGA  99
       ||||||||    |||| ||   || |||| ||||| || || |||||||
seq2  CTGATCAAA---GAGCCTGA--GCT-TTCTGGCAGGAAGGCA-GAGGAGA  82

seq1  CAAGATTCCATACTGGGTAGAGCCTGAGAATAGAAGACCTCAAGGCCCAC  149
      |   | | ||||||  ||||||| ||||||||||||  ||||    ||||
seq2  C---AGTTCATACT--GTAGAGCTTGAGAATAGAAG--CTCA---GCCAC  122

seq1  CTACACAGTGATGTACTTTCTTCAACAAGGCCACACTTCCTCCAGTAATG  199
       | || |||||||||| ||||||||||| ||||||||  ||||||| |||
seq2  TTCCA-AGTGATGTAC-TTCTTCAACAA-GCCACACT--CTCCAGT-ATG  166

seq1  TCACACCTCTTAACAGTGCCACTCCCTATGGCCAAGCACTCATCTATGGG  249
      ||||||||||  |||||| |||| ||||||| ||||||||||||||||||
seq2  TCACACCTCT--ACAGTG-CACT-CCTATGG-CAAGCACTCATCTATGGG  211

seq1  GGCCAAACCTACTCAAACCATCATGAGCACCCTTGGCAAGAATGCTTTAT  299
      |||  || ||||||||||||||||||||| || |||||||||||||||||
seq2  GGC--AAACTACTCAAACCATCATGAGCA-CCATGGCAAGAATGCTTTAT  258

seq1  TTCAACTTAGGAGTGGCTCTCAGAAATGTAATAAAAACTAGAAAGTACC-  348
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  TTCAACTTAGGAGTGGCTCTCAGAAATGTAAT-AAAACTAGAAAGTACCT  307

seq1  TAAAAACACTACAAGGGACAGGAAGTTTTACTAAACATGGCTGCAGAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACACTACAAGGGACAGGAAGTTTTACTAAACATGGCTGCAGAAGG  357

seq1  CTGATCAAGAAAGTGGACACCCAGTAGCCGTGGAATCTTCCTGGTAGTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCAAGAAAGTGGACACCCAGTAGCCGTGGAATCTTCCTGGTAGTGA  407

seq1  GAGTGCAGGACTAGACCTAGAGGGGGTGAAAACCTTCACACTAGCCTTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAGGACTAGACCTAGAGGGGGTGAAAACCTTCACACTAGCCTTAG  457

seq1  ACACAGTCTAAGGGATCAATAACATCTCAGGAAACTAAATGTTAACATCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTCTAAGGGATCAATAACATCTCAGGAAACTAAATGTTAACATCC  507

seq1  CATGTAAAATCAAGATTGACCCAAAAATTATGATTTAAAAATCTTTTAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAAATCAAGATTGACCCAAAAATTATGATTTAAAAATCTTTTAAA  557

seq1  GACAGGATCTAACTGTATAACTTGGCCTGATCTCAAAATAGAGAATCTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATCTAACTGTATAACTTGGCCTGATCTCAAAATAGAGAATCTCT  607

seq1  GTGGAAATCTGACAAGCAAGATACGATTGGAAGTCTGAAAACCAGCCAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATCTGACAAGCAAGATACGATTGGAAGTCTGAAAACCAGCCAGA  657

seq1  TCCACCAATGTAATAGAGTCCTGAGGTATCTGGGCTTATTTAGATAGTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAATGTAATAGAGTCCTGAGGTATCTGGGCTTATTTAGATAGTTG  707

seq1  TGTAGATTCACATAGAGCCATGCCAATTAGAGTGTTCAAATTCACTGCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATTCACATAGAGCCATGCCAATTAGAGTGTTCAAATTCACTGCTA  757

seq1  TCCAAATATGGGGTCTGCAATTCACTGACAAGAAGAAAAACTGGGCAGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATATGGGGTCTGCAATTCACTGACAAGAAGAAAAACTGGGCAGAT  807

seq1  GGAAAGACAGAGCAATAAGGGGCAGAGGACACTGGGAATGTCTCTCTGAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACAGAGCAATAAGGGGCAGAGGACACTGGGAATGTCTCTCTGAC  857

seq1  AAGAGCAACTGCAGGGAATGGCCTACAGATCAAGACCCATCTGGGAGAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAACTGCAGGGAATGGCCTACAGATCAAGACCCATCTGGGAGAAG  907

seq1  CAGCCATTACAAATAACAAATAAAATCCTAACAAAAGGCCCATGTCTCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTACAAATAACAAATAAAATCCTAACAAAAGGCCCATGTCTCAG  957

seq1  GCATGAACTCCTACCCTTTTAACAGATGAAGAAGAGAAAATGTAAAGTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAACTCCTACCCTTTTAACAGATGAAGAAGAGAAAATGTAAAGTCT  1007

seq1  GAAAATTTTCAGATAAGACAAATTATCTGAATAGTCAGGTACCCAAATAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTTCAGATAAGACAAATTATCTGAATAGTCAGGTACCCAAATAG  1057

seq1  CCAAGTCCTCATAAGAACTTGTGAGTATGTGACATCTGGAATTCTGGGCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCCTCATAAGAACTTGTGAGTATGTGACATCTGGAATTCTGGGCA  1107

seq1  GTCTTCCCAGGGTATATAAATGCTAAGGCCCTGAGAGTTGGGAAACTGTT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCCAGGGTATATAAATGCTAAGGCCCTGAGAGTTGGGAAACTGTT  1157

seq1  GGTGGGTTTCTATACCCTCTGAAGAGTTTCCAGAATTC  1236
      ||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTTTCTATACCCTCTGAAGAGTTTCCAGAATTC  1195

seq1: chr10_18291077_18292118
seq2: B6Ng01-005D12.g_78_1113

seq1  TTAATTCAGGGTGGTCTGATAAGATACAAGGAGTTATTCTAATTTTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCAGGGTGGTCTGATAAGATACAAGGAGTTATTCTAATTTTCTTG  50

seq1  TATTTGTTGGGGCTGTGCTGTGAGATTAGGAGGTGGAGAGAATTGGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTGGGGCTGTGCTGTGAGATTAGGAGGTGGAGAGAATTGGTTTC  100

seq1  TTATCAGAGCTGCAGGTTTTGCTCAAGTCTCCTGGGTTTGGGAATAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGAGCTGCAGGTTTTGCTCAAGTCTCCTGGGTTTGGGAATAAGAC  150

seq1  AAAAGGTATTAAATTGGCACGCATAATTCTGGGGTTCATGGCATGAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTATTAAATTGGCACGCATAATTCTGGGGTTCATGGCATGAGCTG  200

seq1  GGACACCACTAAGTTCCCAAAGCTGACCCAGACAAAAGCTAGGTGGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCACTAAGTTCCCAAAGCTGACCCAGACAAAAGCTAGGTGGCAGG  250

seq1  GATTTACCAGCTCATCTCAAAGGCTTCTCTACCTTGGAGAATTTGAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACCAGCTCATCTCAAAGGCTTCTCTACCTTGGAGAATTTGAGCTC  300

seq1  AGAGGTGCTGGGAGCCCCTGCTGTGCAAAGAGACAAGCGGCTCAGAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGCTGGGAGCCCCTGCTGTGCAAAGAGACAAGCGGCTCAGAAAGC  350

seq1  AAAGCGGCAGATGGTAGTGGCTGCTTACCTCCTACAATCAGATAAGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGGCAGATGGTAGTGGCTGCTTACCTCCTACAATCAGATAAGTAAA  400

seq1  GAATAGAGAGAAATGAGGTTTGTTTAAGTGTTTAAACAAATTAGGCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAGAGAAATGAGGTTTGTTTAAGTGTTTAAACAAATTAGGCTTGA  450

seq1  ACTCACTATTAAAAATGAATTTGAAAATTTCCAAATGGAAAACACATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTATTAAAAATGAATTTGAAAATTTCCAAATGGAAAACACATGCT  500

seq1  GCGACATAAAATTAGGAGGTGGGGAGAATTGGTCTTTTAGCAGAGTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACATAAAATTAGGAGGTGGGGAGAATTGGTCTTTTAGCAGAGTTGCT  550

seq1  CGGTTTTTGTCTAGGGCATGTGGGTTTGAGACAAGGACAAAGGGTGTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTTTGTCTAGGGCATGTGGGTTTGAGACAAGGACAAAGGGTGTGCT  600

seq1  AAATTGGCACTCCTAATTCTGGGGTTCTTGGTTTAAGGCCGAGATATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGCACTCCTAATTCTGGGGTTCTTGGTTTAAGGCCGAGATATGCC  650

seq1  CAGACTAACCCAGGGACATGGGGGCAGGCTAAAGGTTCAGGCAGAGGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTAACCCAGGGACATGGGGGCAGGCTAAAGGTTCAGGCAGAGGATC  700

seq1  TGTCCTGTTCTGGGCTGCTGCAGAGAGCTTAAGCCATTGATGCTGAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTTCTGGGCTGCTGCAGAGAGCTTAAGCCATTGATGCTGAGAGC  750

seq1  TCTTGCTGAGAAGGGAGGCTGAAGACAGCAGGCTTGAATAAGATGGGAAT  800
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTTGCTGAGAAGGGAGGCTGAAGACAGCACGCTTGAATAAGATGGGAAT  800

seq1  AAAGGAAAGTTGCGTTGTTTAGGTTGGAAGGATAAGCCTGAGAATAGGCT  850
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAGGAAAGTTGCGTTGTTTAGGTTGGAAGGATAAGCCTGAGAATAGGCT  849

seq1  CATACAGAAATATA-GAAGGG-AATTTAATTGAAGCTAAATATACAGGAA  898
      |||||||||||||| |||||| ||||||||||||||||| ||||||||||
seq2  CATACAGAAATATAGGAAGGGAAATTTAATTGAAGCTAATTATACAGGAA  899

seq1  AGGATGTTAATTCAAGTTATATAAATAAAGGGGATATATATTATATATCC  948
      ||||||||| |||||||||||||||||||||||||||||| ||||||| |
seq2  AGGATGTTATTTCAAGTTATATAAATAAAGGGGATATATA-TATATAT-C  947

seq1  ACAGATACTAATCTCGTTACAAGGGAGAGGAATAAAGGGAAATTGCATTG  998
      ||||||||||||||| |||||  |||||||||||||||| ||||||||||
seq2  ACAGATACTAATCTC-TTACA--GGAGAGGAATAAAGGG-AATTGCATTG  993

seq1  TTTTAAGGATAGAAGGGAGATATAGTGGAAATTGTTTAAGTGCC  1042
       ||||||||||||| ||||| |||  |||| | |||||||||||
seq2  -TTTAAGGATAGAACGGAGAAATATGGGAACTGGTTTAAGTGCC  1036