BAC Information

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BAC

Clone NameB6Ng01-005E24
Chromosome12 (Build37)10 (Build37)
Map Location 115,663,418 - 115,664,519104,053,602 - 104,054,363
singlet/doubletsingletsinglet
Overlap geneIgh
Upstream geneIghj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510
Downstream geneIghv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005E24.bB6Ng01-005E24.g
ACCDH842482DH842483
length1,101964
definitionDH842482|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E24, 5' end.DH842483|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(115,663,418 - 115,664,519)(104,053,602 - 104,054,363)
sequence
gaattcactaaggtctcaggaacttccgatcttggtgattaaaccagaag
catccttcctcccatcggtgacaaaattcactttgttcctgtgagaaagt
gttaatgcaatataatatatagcataataagggtaaaccagtaaataaaa
aagagaggtgatactatgtacacacaccagtgaaaatatattcatttttg
taatagttgtgtttggcacagcttttgtgtttccatcaaggggatattgt
aaataaaagatttgcataacaaaaatagcagaaatatctgatttgggtat
ttcctgcttgaaatttgccctgtgttccctttacctgtgtagtgcaatgt
gaataagaaagcagagtttcacttgtagctatttttcttacataatagaa
gactcacacatataggttaataacaacaagagatttactgatatatagat
atatctcagttatataggcatggtctcttgtttctcccaaaaattctcca
tgaagaaatgctaacatcttaaatatatattttatgagtatgattctctc
acatattattatttaataaaaatagttgttctttacacataatgatacaa
tgaacggaaaataagggattttttttttttagatgaatagctcaagtatt
ttggttttaatgagaaatgtctccagtagactcctatatctgaaaacttg
ttccatggtggaaaatgttgtttggggaagttatggaacttatagggctt
ggagcctcactggattaagtacatcactgggtttgcaatttatattcttc
ccaactttccagttttgctagtttagactcctctgtcatgaaaagtgatc
ttcattttccctctcctgccctcagatgtcatgccttcctttcattttga
actctccttctggtacagaagccaggtatactcatttttctccactgaag
tgggattagaccacattccttttgtgatacataaataacaacaaacaagg
ttaatgaatgggcatataataaacgatattcaatgttaatggatagaatt
catttgggctttttgacagtcacttagtgcggtgaaagtttgctgcacct
a
gaattctcacctgaggaatagcgaatggctgagaagcacctgaaaaaata
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggataagatcaaaaatataggtgacagc
agatgctggtgaggatgtggagaaaaaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaagaatgaaattatgaaattcctaggca
aatggttggacctggagggcatcatcctgagtgaggtaacacaatgacaa
aatctcttctaaacatcacttggaaataaagatgcctattgccaatgagc
ggaggcaggaaataggagatgggacatccaggagagggaattatgagaaa
gactttaggcaagggagattttactcagaacactgaggagtcaggcatag
aatacaaagataggaaccaggcacatagctaaactctcattaaaatcaaa
agtataacatgtgattaatttcagagttttctttttcctctgggaattaa
ctggccaggaggaaaagcagcaagtaacacataccaagcccgaactgctc
atcttgtgtaaccacacaagacttacagtggagggattgagataccaact
cagccacaaaaccttttgacctacaatttgtcatacctgccaaatgtctt
acggtggtgcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_115663418_115664519
seq2: B6Ng01-005E24.b_46_1146

seq1  GAATTCACTAAGGTCTCAGGAACTTCCGATCTTGGTGATTAAACCAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAGGTCTCAGGAACTTCCGATCTTGGTGATTAAACCAGAAG  50

seq1  CATCCTTCCTCCCATCGGTGACAAAATTCACTTTGTTCCTGTGAGAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCCTCCCATCGGTGACAAAATTCACTTTGTTCCTGTGAGAAAGT  100

seq1  GTTAATGCAATATAATATATAGCATAATAAGGGTAAACCAGTAAATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGCAATATAATATATAGCATAATAAGGGTAAACCAGTAAATAAAA  150

seq1  AAGAGAGGTGATACTATGTACACACACCAGTGAAAATATATTCATTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGTGATACTATGTACACACACCAGTGAAAATATATTCATTTTTG  200

seq1  TAATAGTTGTGTTTGGCACAGCTTTTGTGTTTCCATCAAGGGGATATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTTGTGTTTGGCACAGCTTTTGTGTTTCCATCAAGGGGATATTGT  250

seq1  AAATAAAAGATTTGCATAACAAAAATAGCAGAAATATCTGATTTGGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGATTTGCATAACAAAAATAGCAGAAATATCTGATTTGGGTAT  300

seq1  TTCCTGCTTGAAATTTGCCCTGTGTTCCCTTTACCTGTGTAGTGCAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTTGAAATTTGCCCTGTGTTCCCTTTACCTGTGTAGTGCAATGT  350

seq1  GAATAAGAAAGCAGAGTTTCACTTGTAGCTATTTTTCTTACATAATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGAAAGCAGAGTTTCACTTGTAGCTATTTTTCTTACATAATAGAA  400

seq1  GACTCACACATATAGGTTAATAACAACAAGAGATTTACTGATATATAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACACATATAGGTTAATAACAACAAGAGATTTACTGATATATAGAT  450

seq1  ATATCTCAGTTATATAGGCATGGTCTCTTGTTTCTCCCAAAAATTCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCAGTTATATAGGCATGGTCTCTTGTTTCTCCCAAAAATTCTCCA  500

seq1  TGAAGAAATGCTAACATCTTAAATATATATTTTATGAGTATGATTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAATGCTAACATCTTAAATATATATTTTATGAGTATGATTCTCTC  550

seq1  ACATATTATTATTTAATAAAAATAGTTGTTCTTTACACATAATGATACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTATTATTTAATAAAAATAGTTGTTCTTTACACATAATGATACAA  600

seq1  TGAACGGAAAATAAGGGATTTTTTTTTTTTAGATGAATAGCTCAAGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGGAAAATAAGGGATTTTTTTTTTTTAGATGAATAGCTCAAGTATT  650

seq1  TTGGTTTTAATGAGAAATGTCTCCAGTAGACTCCTATATCTGAAAACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTAATGAGAAATGTCTCCAGTAGACTCCTATATCTGAAAACTTG  700

seq1  TTCCATGGTGGAAAATGTTGTTTGGGGAAGTTATGGAACTTATAGGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGTGGAAAATGTTGTTTGGGGAAGTTATGGAACTTATAGGGCTT  750

seq1  GGAGCCTCACTGGATTAAGTACATCACTGGGTTTGCAATTTATATTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTCACTGGATTAAGTACATCACTGGGTTTGCAATTTATATTCTTC  800

seq1  CCAAC-TTCCAG-TTTGCTAGTTTAGACTCCTCTGTCATGAAAAGTGATC  848
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTCCAGTTTTGCTAGTTTAGACTCCTCTGTCATGAAAAGTGATC  850

seq1  TTCATTTTCCCTCTCCTGCCCTCAGATGTCATGCCTTCCTTTCCATTTTG  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCATTTTCCCTCTCCTGCCCTCAGATGTCATGCCTTCCTTT-CATTTTG  899

seq1  AACTCTCCCTCTGGTACCAGAAGCCAAGGTATACTCA-TTTTCT-CACTG  946
      |||||||| ||||||| |||||||| ||||||||||| |||||| |||||
seq2  AACTCTCCTTCTGGTA-CAGAAGCC-AGGTATACTCATTTTTCTCCACTG  947

seq1  AAGTGGGATTTAGA-CACATT-CTTTTGTGATACATAAA-AACAACAAAA  993
      |||||||| ||||| |||||| ||||||||||||||||| |||||| |||
seq2  AAGTGGGA-TTAGACCACATTCCTTTTGTGATACATAAATAACAAC-AAA  995

seq1  CAAGGTTAATATATGGGCATAT-ATAAAAGAATATCAATGTT-ATGGATA  1041
      ||||||||||  |||||||||| ||||| ||   |||||||| |||||||
seq2  CAAGGTTAATGAATGGGCATATAATAAACGATATTCAATGTTAATGGATA  1045

seq1  GGAAAGTACATTGGGGCTTTTTGACAGTCACTTGGTGCGGTGAAAAGTTT  1091
      |   | | |||| |||||||||||||||||||| |||||||||||   ||
seq2  G---AATTCATTTGGGCTTTTTGACAGTCACTTAGTGCGGTGAAA--GTT  1090

seq1  TGCTGCACCTA  1102
      |||||||||||
seq2  TGCTGCACCTA  1101

seq1: chr10_104053602_104054363
seq2: B6Ng01-005E24.g_70_620 (reverse)

seq1  TTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCCATCCAT  50
      ||||| |||| |||||| ||||||||||||| | ||||||||||| ||||
seq2  TTTGTCATTGTGTTACCTCACTCAGGATGATGCCCTCCAGGTCCAACCAT  50

seq1  TTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATTTACATT  100
      ||||||||||||||||||| ||||||||||||||||||            
seq2  TTGCCTAGGAATTTCATAATTTCATTCTTTTTAATAGC------------  88

seq1  TAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAAATAATTT  150
                                                        
seq2  --------------------------------------------------  88

seq1  AATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTAATTAAAT  200
                                                        
seq2  --------------------------------------------------  88

seq1  TAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATAATAATTT  250
                                                        
seq2  --------------------------------------------------  88

seq1  TATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATTACATTAC  300
        | ||||                             |||          
seq2  --TGAGTA-----------------------------GTA----------  97

seq1  ATTTAATAGCTCCATTGTGTAAATGTACCACA-TTTTCTGTATCTATTCC  349
               ||||||||||||||||||||||| |||| |||||| |||||
seq2  ---------CTCCATTGTGTAAATGTACCACATTTTTTTGTATCCATTCC  138

seq1  TCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAA  399
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAA  188

seq1  GGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCAT  449
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  GGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGACAT  238

seq1  CTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACT  499
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACT  288

seq1  ATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTAC  549
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTAC  338

seq1  AAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATC  599
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTTTTTCTCCACATC  388

seq1  CTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACT  649
      ||| |||||||||||||||||||  ||||||||||||| |||||||||||
seq2  CTCACCAGCATCTGCTGTCACCTATATTTTTGATCTTATCCATTCTGACT  438

seq1  GGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGAT  699
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  GGTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATTTCTCTGATGAT  488

seq1  TAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCT  749
      ||||||||||||| ||||||||||||||||||| |||||||| |||||||
seq2  TAAGGATGTTGAATATTTTTTCAGGTGCTTCTCAGCCATTCGCTATTCCT  538

seq1  CAGGTGAGAATTC  762
      |||||||||||||
seq2  CAGGTGAGAATTC  551