BAC Information

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BAC

Clone NameB6Ng01-005F04
Chromosome10 (Build37)
Map Location 11,888,558 - 12,036,301
singlet/doubletdoublet
Overlap genenone
Upstream geneShprh, Fbxo30, Epm2a, EG666732, LOC100039343
Downstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005F04.bB6Ng01-005F04.g
ACCDH842488DH842489
length1,1651,000
definitionDH842488|Mus musculus domesticus DNA, BAC clone: B6Ng01-005F04, 5' end.DH842489|Mus musculus domesticus DNA, BAC clone: B6Ng01-005F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,035,127 - 12,036,301)(11,888,558 - 11,889,636)
sequence
gaattcaaagtgtaatattaccttagagagacagtgaacacagacttgtc
aaccctcagcaggaagggaagtcagccttcaccatctactagacccttag
agcaaaatgtgaagataagagctacatttaccatccacaaaagaaaatga
aagctcagattaaataaatatgcttaaggctaatgttaaattagaataac
tgacttcaaaggagcgatttgaaaagccgtataggccaacaaccactaaa
gaattaaaattctgataaaaaattcttaccttgcctacttagtcaccctc
caaaattagaccaggtaggtgggcaaattcttttgcaaattttcaaagac
aaggcaaatcatattttataaaaatgcacctaaaatataacaagaggtga
aacatctctgactcatttttagtacattgtttacatagtgtacaagaaga
aagtcgaagacaatgttactgtggaccaggaatctgttaggagcagaatc
cctgatgctcatcaagttgttgttctgcagagtagattgacagtccgctt
cagcctgttggttgaatggtccacatcatgtggggatgaggaaggatgct
ccccgggtagaaaacagtgtgtgcctgttaaatgtagagtactatgagat
gttcactgagtctagtattgctaccaaaaggcaacacaaataaataacaa
caaaaaaaaaaaaagaaatgaaagttatcaagatcgggaagaaagagatc
aaattttaatggcataaatatattttcatatcattttttatgtctgctaa
tactgttcactttgagtgaaatcatgaatgcttttcttttctgagatagt
cctctggctgatatatatacttctggctggcctagaacttagagtgttag
gtccaaaagcactagaccacagaggagaccaccactcacatgtgcaatat
gcaagagtgtttttatttcaagaaagcagagcctgcatgtagggctcagt
cacttaaaaggggtgcagtctttttatagggactaggagatttagttagg
gttgtaatctaaatgtcattggtaatgccagggaagcttcatgggtcagt
ttctgattggctgctatggtattcactatatttgggtaagcttgaagaat
ctcaggaacttgact
gaattcactgaagctatgcctatatgaatgaggtctgcacaaaactgggc
ccattaacatgtccttgtgagtagccagccctgactgtgggactatcaat
agtcaatggctgctaagggagaaggtgtcattccaataaatatctaccta
cttacactaatgcaagcaatgataatatttatgattgaaaatccctggat
atacatacacgtacacaatggagaggtcagggtatttgaaaggatgaggg
tagcttcctagagagaagatctttggtgggaaaagaaaggggatgttggt
aacagaacatgagagatgacccgaaattcattaattacatgtatgaagtt
gtcaaagaatttaaatagtaaccttctgcagttttagtattattacacca
atttattattttaaaaccctgagccccaaggactttaattcttcctatta
atttcatttttaccttgtttgatatttatacaattgatatctgtataaac
agcaaatgatgaaaggcattatgtgctttcaggaatgttttccactgaag
ccttgtgggttttatgtgctaagtatctcaagagcttcatgaataaaacc
taaaatcaagctgctcctctgaactatacgagaaaaatttcatgctcttc
attacagttcttagcttttcaccaaggaataattatgaaagttgacactc
aagaaacaggtcaatcactgaataagaaaaaagattattttttgagtagg
agttcttgacagttcttataagctggagagagcgtctcttcaaactctga
aataaatttcttttctgtgagttagatctaaatcatgaataaagactaga
aaagcattgacaaattcatctcagtagaaagacttctacattaccagaga
ttttactaccagaaataaaaagttcaatctagtaagactatggtgtgata
taggattgagccttcatggaagaatcgatcagtatctagagacttggtta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12035127_12036301
seq2: B6Ng01-005F04.b_47_1211 (reverse)

seq1  AGTC-AGTTCCTGGGATTTCCTCAAAGCTTTACCAAATATAGTGAAATTA  49
      |||| |||||||| ||||  ||  ||||||  ||||||||||||||  ||
seq2  AGTCAAGTTCCTGAGATT--CTTCAAGCTTACCCAAATATAGTGAA--TA  46

seq1  CCATAGCAGCCAATCAGAAACTGACCCATGAAGCTTCCCTGGCATCTACC  99
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCATAGCAGCCAATCAGAAACTGACCCATGAAGCTTCCCTGGCAT-TACC  95

seq1  AATGACATTTTAGATTACCAACCCTAACTAAATTCTCCTAGTTCCCTAT-  148
      ||||||| ||||||||| |||||||||||||| |||||||| ||||||| 
seq2  AATGACA-TTTAGATTA-CAACCCTAACTAAA-TCTCCTAG-TCCCTATA  141

seq1  AAAAGACTTGCACCCCTTTTAAGTGACTGAGCCCTACATGCAGGCTTCTT  198
      ||||||| ||||||||||||||||||||||||||||||||||||||   |
seq2  AAAAGAC-TGCACCCCTTTTAAGTGACTGAGCCCTACATGCAGGCT--CT  188

seq1  GCTTTCTTGAAATAAAAACACTCTTGCATATTGCACATGTGAGTGGTGGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTGAAATAAAAACACTCTTGCATATTGCACATGTGAGTGGTGGT  238

seq1  CTCCTCTGTGGTCTAGTGCTTTTGGACCTAACACTCTAAGTTCTAGGCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGTGGTCTAGTGCTTTTGGACCTAACACTCTAAGTTCTAGGCCA  288

seq1  GCCAGAAGTATATATATCAGCCAGAGGACTATCTCAGAAAAGAAAAGCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGTATATATATCAGCCAGAGGACTATCTCAGAAAAGAAAAGCAT  338

seq1  TCATGATTTCACTCAAAGTGAACAGTATTAGCAGACATAAAAAATGATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTTCACTCAAAGTGAACAGTATTAGCAGACATAAAAAATGATAT  388

seq1  GAAAATATATTTATGCCATTAAAATTTGATCTCTTTCTTCCCGATCTTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATATTTATGCCATTAAAATTTGATCTCTTTCTTCCCGATCTTGA  438

seq1  TAACTTTCATTTCTTTTTTTTTTTTTGTTGTTATTTATTTGTGTTGCCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCATTTCTTTTTTTTTTTTTGTTGTTATTTATTTGTGTTGCCTT  488

seq1  TTGGTAGCAATACTAGACTCAGTGAACATCTCATAGTACTCTACATTTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGCAATACTAGACTCAGTGAACATCTCATAGTACTCTACATTTAA  538

seq1  CAGGCACACACTGTTTTCTACCCGGGGAGCATCCTTCCTCATCCCCACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACACACTGTTTTCTACCCGGGGAGCATCCTTCCTCATCCCCACAT  588

seq1  GATGTGGACCATTCAACCAACAGGCTGAAGCGGACTGTCAATCTACTCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGACCATTCAACCAACAGGCTGAAGCGGACTGTCAATCTACTCTG  638

seq1  CAGAACAACAACTTGATGAGCATCAGGGATTCTGCTCCTAACAGATTCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAACAACTTGATGAGCATCAGGGATTCTGCTCCTAACAGATTCCT  688

seq1  GGTCCACAGTAACATTGTCTTCGACTTTCTTCTTGTACACTATGTAAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACAGTAACATTGTCTTCGACTTTCTTCTTGTACACTATGTAAACA  738

seq1  ATGTACTAAAAATGAGTCAGAGATGTTTCACCTCTTGTTATATTTTAGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTAAAAATGAGTCAGAGATGTTTCACCTCTTGTTATATTTTAGGT  788

seq1  GCATTTTTATAAAATATGATTTGCCTTGTCTTTGAAAATTTGCAAAAGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTATAAAATATGATTTGCCTTGTCTTTGAAAATTTGCAAAAGAA  838

seq1  TTTGCCCACCTACCTGGTCTAATTTTGGAGGGTGACTAAGTAGGCAAGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCACCTACCTGGTCTAATTTTGGAGGGTGACTAAGTAGGCAAGGT  888

seq1  AAGAATTTTTTATCAGAATTTTAATTCTTTAGTGGTTGTTGGCCTATACG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTTTTATCAGAATTTTAATTCTTTAGTGGTTGTTGGCCTATACG  938

seq1  GCTTTTCAAATCGCTCCTTTGAAGTCAGTTATTCTAATTTAACATTAGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCAAATCGCTCCTTTGAAGTCAGTTATTCTAATTTAACATTAGCC  988

seq1  TTAAGCATATTTATTTAATCTGAGCTTTCATTTTCTTTTGTGGATGGTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCATATTTATTTAATCTGAGCTTTCATTTTCTTTTGTGGATGGTAA  1038

seq1  ATGTAGCTCTTATCTTCACATTTTGCTCTAAGGGTCTAGTAGATGGTGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTCTTATCTTCACATTTTGCTCTAAGGGTCTAGTAGATGGTGAA  1088

seq1  GGCTGACTTCCCTTCCTGCTGAGGGTTGACAAGTCTGTGTTCACTGTCTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACTTCCCTTCCTGCTGAGGGTTGACAAGTCTGTGTTCACTGTCTC  1138

seq1  TCTAAGGTAATATTACACTTTGAATTC  1175
      |||||||||||||||||||||||||||
seq2  TCTAAGGTAATATTACACTTTGAATTC  1165

seq1: chr10_11888558_11889636
seq2: B6Ng01-005F04.g_68_1067

seq1  GAATTCACTGAAGCTATGCCTATATGAATGAGGTCTGCACAAAACTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAGCTATGCCTATATGAATGAGGTCTGCACAAAACTGGGC  50

seq1  CCATTAACATGTCCTTGTGAGTAGCCAGCCCTGACTGTGGGACTATCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAACATGTCCTTGTGAGTAGCCAGCCCTGACTGTGGGACTATCAAT  100

seq1  AGTCAATGGCTGCTAAGGGAGAAGGTGTCATTCCAATAAATATCTACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGGCTGCTAAGGGAGAAGGTGTCATTCCAATAAATATCTACCTA  150

seq1  CTTACACTAATGCAAGCAATGATAATATTTATGATTGAAAATCCCTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACTAATGCAAGCAATGATAATATTTATGATTGAAAATCCCTGGAT  200

seq1  ATACATACACGTACACAATGGAGAGGTCAGGGTATTTGAAAGGATGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACACGTACACAATGGAGAGGTCAGGGTATTTGAAAGGATGAGGG  250

seq1  TAGCTTCCTAGAGAGAAGATCTTTGGTGGGAAAAGAAAGGGGATGTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCCTAGAGAGAAGATCTTTGGTGGGAAAAGAAAGGGGATGTTGGT  300

seq1  AACAGAACATGAGAGATGACCCGAAATTCATTAATTACATGTATGAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACATGAGAGATGACCCGAAATTCATTAATTACATGTATGAAGTT  350

seq1  GTCAAAGAATTTAAATAGTAACCTTCTGCAGTTTTAGTATTATTACACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGAATTTAAATAGTAACCTTCTGCAGTTTTAGTATTATTACACCA  400

seq1  ATTTATTATTTTAAAACCCTGAGCCCCAAGGACTTTAATTCTTCCTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATTTTAAAACCCTGAGCCCCAAGGACTTTAATTCTTCCTATTA  450

seq1  ATTTCATTTTTACCTTGTTTGATATTTATACAATTGATATCTGTATAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTTTACCTTGTTTGATATTTATACAATTGATATCTGTATAAAC  500

seq1  AGCAAATGATGAAAGGCATTATGTGCTTTCAGGAATGTTTTCCACTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGATGAAAGGCATTATGTGCTTTCAGGAATGTTTTCCACTGAAG  550

seq1  CCTTGTGGGTTTTATGTGCTAAGTATCTCAAGAGCTTCATGAATAAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGGGTTTTATGTGCTAAGTATCTCAAGAGCTTCATGAATAAAACC  600

seq1  TAAAATCAAGCTGCTCCTCTGAACTATACGAGAAAAATTTCATGCTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAAGCTGCTCCTCTGAACTATACGAGAAAAATTTCATGCTCTTC  650

seq1  ATTACAGTTCTTAGCTTTTCACCAAGGAATAATTATGAAAGTTGACACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTTCTTAGCTTTTCACCAAGGAATAATTATGAAAGTTGACACTC  700

seq1  AAGAAACAGGTCAATCACTGAATAAGAAAAAAGATTATTTTTTGAGTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAGGTCAATCACTGAATAAGAAAAAAGATTATTTTTTGAGTAGG  750

seq1  AGTTCTTGACAGTTCTTATAAGCTGGAGAGAGGCGTCTCTTCAAACTCTG  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGTTCTTGACAGTTCTTATAAGCTGGAGAGA-GCGTCTCTTCAAACTCTG  799

seq1  AAATAAATTTCTTTTCTGTGAGTTAGATCTAAAATTCAATGAATAAAGAC  850
      |||||||||||||||||||||||||||||||||  || ||||||||||||
seq2  AAATAAATTTCTTTTCTGTGAGTTAGATCTAAA--TC-ATGAATAAAGAC  846

seq1  TAGAAAAGCATTGAACAAATTCATCTCAGTTAGAAAGACTTCTACATTGG  900
      ||||||||||||| ||||||||||||||| ||||||||||||||||||  
seq2  TAGAAAAGCATTG-ACAAATTCATCTCAG-TAGAAAGACTTCTACATT--  892

seq1  CCCAGAGATTTTTAACTACACAGAAATAAAAAAGTTCAATCCTAGTAAAA  950
       |||||||||||  ||||| ||||||| |||||||||||| |||||||  
seq2  ACCAGAGATTTT--ACTAC-CAGAAAT-AAAAAGTTCAAT-CTAGTAA--  935

seq1  GAACTATGGTGTGATATAGGAATGAGGCTTTCATGGAGAGATCGAATCAG  1000
        ||||||||||||||||||| ||| || ||||||||   |||| |||||
seq2  -GACTATGGTGTGATATAGGATTGA-GCCTTCATGGAAGAATCG-ATCAG  982

seq1  TAATCTTAGTAGGAACAGTGGTT-TTAGTCTGTCAACCTGGTCCCTATCA  1049
      | |||    |||  ||  |||||                           
seq2  T-ATC----TAGAGAC-TTGGTTA--------------------------  1000

seq1  AAATGTCCCAGCCTAGGAAAGACTTGGTTA  1079
                                    
seq2  ------------------------------  1000