BAC Information

Click to search

BAC

Clone NameB6Ng01-005I18
Chromosome10 (Build37)
Map Location 55,728,801 - 55,729,906
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382460, LOC100041927
Downstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355, LOC100042628, EG629739
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005I18.bB6Ng01-005I18.g
ACCDH842654DH842655
length1,2461,126
definitionDH842654|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I18, 5' end.DH842655|Mus musculus domesticus DNA, BAC clone: B6Ng01-005I18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtacccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactaggcaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggaaatcaagggg
atacaaattggagaggaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaatattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacaaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactctttctcaaggataaaagaacctctggtggaatc
accatgcctgacctaaagctttactacagagcaattgttggtaaaaactg
catggtactggtatagagacagacaagtagaccaatggaatagattgaag
acccagaaatgaacccacacacctatggtcacttgatcttcgacaaggga
gctaaaaccatccagtggaagaaagacagcattttcaacaaatggtgctg
gcacaactggttgtatcgtgtagaagatgcgatcgatccatacttatctc
cttgtactaaggtcaatctaaatggatcaagacttcacattaaaccagag
accactgtacctattgagggagaagtggggaagccttgagaattggccac
agggtaaaattcttgacagacagccaatgtttgtgctcgtagattcgaga
tttacaaatggaccctttgtaatccaagttctggcaagccaagaacctcc
atagacatagagacatcaccagatttgtgaaggagaatcttttcgt
gaattctcatctagttaaattctttatatttttattgatccatggattac
ataggagcatactatttagtgtccaaagtaatttttatttcttagaaata
ctgtaattgtaattgttttctagtataatcttagaaagaccattcttggg
gcaggaggaatagctcagtgtttaagaaaactttccctttcagaaaatct
gagttcccagtacctacattaggcagcacaaaacctaatggaactccaac
catatgggcaccaagaccctcttctggattctaccaacagctgtacatac
atgtacatgcatgtacacacaaaaataaatctttaaaaataatgctttgt
ataattttcgtcttcaaatttattgaaagttggttatacttcaggttttt
aaactcatcttaatgtatacattgtcatttaatgctagcattagtattca
gtagtgctattagtaaatcgtatcttaaattatatcttaaaaactaagca
tacattatttacaagtataagaacaattattcaatcgtactttccagaac
tttctagcttagtactatgaagaatgaaatatccaagtggttttgaatta
taaaacagactcaattggaatattaagtgtcctgacagaatttagataga
acctaaacagatggcttagcagttaaggggacttgctgctcttgcagtct
acctgagttcttttcccaacacttacatcaggtggattacaagcatctgt
aatttcagctccaggggatctcatgtacacatgtggcatacataaataaa
aatagagctttaaaaaatagaccaaacctctctaagaactgacctatgtc
cttgacacattttactcacatattaggagatacattgctaatataaataa
cagtagctcattttgattctatttaatcccatgtgtaactaaacacacgt
gtaaaattttcctcccgtggaatatacatatatgttgggctttatctgaa
ttgcattcatgcatctttatgactgaaacctacccttgttaaccaagtta
tgaattgaaacatattgactttttggaataagagcacttgtcgcaaaaat
atatgcttctctcattggaactgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_55728801_55729906
seq2: B6Ng01-005I18.g_88_1193 (reverse)

seq1  TGTCAGTTTCCATAGGAGAGAAGCATATATTTTTGC-ACAA-TGCTC-TA  47
      |||||||| | ||  ||||||||||||||||||||| |||| ||||| ||
seq2  TGTCAGTTCCAAT--GAGAGAAGCATATATTTTTGCGACAAGTGCTCTTA  48

seq1  TTTCAAAAAGTC-ATATGGTTTCCAAATCATGACTTGGTTTAC-AGGGTA  95
      || ||||||||| |||||  || ||| |||| |||||||| || ||||||
seq2  TTCCAAAAAGTCAATATG--TTTCAATTCATAACTTGGTTAACAAGGGTA  96

seq1  GGTTTCAGTCAT-CAGATGCATGAATGCAATTCAGATAAAG-CCAACATA  143
      ||||||||||||  ||||||||||||||||||||||||||| ||||||||
seq2  GGTTTCAGTCATAAAGATGCATGAATGCAATTCAGATAAAGCCCAACATA  146

seq1  TATGTATATTCCCACGGGAGGAAAATTTTACACGTGTGTTTTAGTTACAC  193
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  TATGTATATT-CCACGGGAGGAAAATTTTACACGTGTG-TTTAGTTACAC  194

seq1  ATGGGATTAAATAGAATC-AAATGAGCTACTGTTATTTATATTAGCAATG  242
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGGGATTAAATAGAATCAAAATGAGCTACTGTTATTTATATTAGCAATG  244

seq1  TATCTCCTAATATGTGAGTAAAAATGTGTCAAGGACATAGGTCAGTTCTT  292
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATCTCCTAATATGTGAGT-AAAATGTGTCAAGGACATAGGTCAGTTCTT  293

seq1  AAGAGAGGTTTGGTCTATTTTTTAAAGCTCTATTTTTATTTATGTATGCC  342
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AGAGAGGTTTGGTCTATTTTTTAAAGCTCTATTTTTATTTATGTATGCC  342

seq1  ACATGTGTACATGAGATCCCCTGGAGCTGGAATTACAGATGCTTGTAATC  392
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACATGTGTACATGAGATCCCCTGGAGCTGAAATTACAGATGCTTGTAATC  392

seq1  CACCTGATGTAAGTGTTGGGAAAAGAACTCAGGTAGACTGCAAGAGCAGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATGTAAGTGTTGGGAAAAGAACTCAGGTAGACTGCAAGAGCAGC  442

seq1  AAGTCCCCTTAACTGCTAAGCCATCTGTTTAGGTTCTATCTAAATTCTGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCCTTAACTGCTAAGCCATCTGTTTAGGTTCTATCTAAATTCTGT  492

seq1  CAGGACACTTAATATTCCAATTGAGTCTGTTTTATAATTCAAAACCACTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACTTAATATTCCAATTGAGTCTGTTTTATAATTCAAAACCACTT  542

seq1  GGATATTTCATTCTTCATAGTACTAAGCTAGAAAGTTCTGGAAAGTACGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTCATTCTTCATAGTACTAAGCTAGAAAGTTCTGGAAAGTACGA  592

seq1  TTGAATAATTGTTCTTATACTTGTAAATAATGTATGCTTAGTTTTTAAGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAATTGTTCTTATACTTGTAAATAATGTATGCTTAGTTTTTAAGA  642

seq1  TATAATTTAAGATACGATTTACTAATAGCACTACTGAATACTAATGCTAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTAAGATACGATTTACTAATAGCACTACTGAATACTAATGCTAG  692

seq1  CATTAAATGACAATGTATACATTAAGATGAGTTTAAAAACCTGAAGTATA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATGACAATGTATACATTAAGATGAGTTTAAAAACCTGAAGTATA  742

seq1  ACCAACTTTCAATAAATTTGAAGACGAAAATTATACAAAGCATTATTTTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTTTCAATAAATTTGAAGACGAAAATTATACAAAGCATTATTTTT  792

seq1  AAAGATTTATTTTTGTGTGTACATGCATGTACATGTATGTACAGCTGTTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTATTTTTGTGTGTACATGCATGTACATGTATGTACAGCTGTTG  842

seq1  GTAGAATCCAGAAGAGGGTCTTGGTGCCCATATGGTTGGAGTTCCATTAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATCCAGAAGAGGGTCTTGGTGCCCATATGGTTGGAGTTCCATTAG  892

seq1  GTTTTGTGCTGCCTAATGTAGGTACTGGGAACTCAGATTTTCTGAAAGGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGCTGCCTAATGTAGGTACTGGGAACTCAGATTTTCTGAAAGGG  942

seq1  AAAGTTTTCTTAAACACTGAGCTATTCCTCCTGCCCCAAGAATGGTCTTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTCTTAAACACTGAGCTATTCCTCCTGCCCCAAGAATGGTCTTT  992

seq1  CTAAGATTATACTAGAAAACAATTACAATTACAGTATTTCTAAGAAATAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTATACTAGAAAACAATTACAATTACAGTATTTCTAAGAAATAA  1042

seq1  AAATTACTTTGGACACTAAATAGTATGCTCCTATGTAATCCATGGATCAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTTGGACACTAAATAGTATGCTCCTATGTAATCCATGGATCAA  1092

seq1  TAAAAATATAAAGA  1106
      ||||||||||||||
seq2  TAAAAATATAAAGA  1106