BAC Information

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BAC

Clone NameB6Ng01-005J02
Chromosome10 (Build37)
Map Location 20,391,775 - 20,522,094
singlet/doubletdoublet
Overlap genePde7b
Upstream geneIl20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344
Downstream geneLOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005J02.bB6Ng01-005J02.g
ACCDH842668DH842669
length8671,200
definitionDH842668|Mus musculus domesticus DNA, BAC clone: B6Ng01-005J02, 5' end.DH842669|Mus musculus domesticus DNA, BAC clone: B6Ng01-005J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,521,235 - 20,522,094)(20,391,775 - 20,392,976)
sequence
gaattccagttagggttgcacctagccaccccccgaaaagtgggtcagag
acttagatgctcactgggggatgagtggaaggtagatagcagccccctgc
cccgactcctgacagaccagagaataggtaaaactctggcggggtgtggg
tttttcccttctctctcttccccagggccccctttttagttcccaacacg
tgtccatggttctggttgcaggaaattaacctcccactaattgaaagcta
ctcaaaggtattgagacttcccttctctgcatctctgatgcttgtgggcc
tcagcctttttctggctgtatttgttgcaccttctgcagtttgaaggcca
atctcattgtgagatgataaaaaagaaacaaacgccacattcagtagctc
tgctttctctgtgtccttggatgtgcatccttacagcaggagagttactt
atttccttctgcccttatctgagcgtacaattctcaaagggcactgcgtt
tgctctcttgggtgggttgtgaaatctcttactacttaccccaggcgtgg
tagggccgttattgtgatgttttagacagagcaaatggctcttttatata
ctcttcgactgatggagttagtctttcaattgcagtgtcaagcaacacag
gggatttttgttttatttcattttgtttatgtggtgatgatggctgtggt
tttgttttgtttgttttaaaatcactaaactttaccatgacttataatgc
cctttagtcttggtggataactatcacacagtagtatgcatacatggatt
tctgctcccttcttgtacttgattgagatcttaagttattttaatttcag
atcccgcccctggtgct
gaattcctgcccataccatgtggtatttaaatataaataagacatttggt
gtgatatgaacaaacccaggagcagaacaatttaatcctgaggacctctt
atttagttgctaatatttttttataaaatatgttttattgaaatacaaaa
gggaatcataataattaatttataatttgttttatgttttgctttgggaa
attacaagttgttttctgacgtacttctcatgtatcttaccttttaatgt
ttgtgtaataattctcctaagaacacttttcagtatactcgtttttaatt
tccatgaccactcaagcccagcgatgccattaaactccatcccccaattc
ttctaagcatatcagtctttatatacgaaattcccttacaatcactttta
acaggaactcagtattttgattctattttaatcaaaatagatgctgtcgt
ttacagcatttctagatcagtttgggtcgtgcagactacagtggaaattc
caaagactcaaaattcctttggattgacatcatccctaaaatatactgag
agattcctaaatatcagaggcatttttccatgcccctgtcctacaatgct
atattgtgtttctttgcattatgttcctggaggaagtgtgctgcagagga
aaaatgcactgagcaggaaacgcaggccgtagagttgaagcgttctgcgg
tcgtgtgatcttaggcaagtgacaaccacttgtttttctcagtaacatcg
cactgatagagactgcgctcagacagctcttgcaaggatggaatgggcag
gagtcctttaactccatgtctgtcaggaggagcagatggagctgaacgct
gctttgtacatcaatgctttcagattgccaagtaacagctccttacttaa
aacttcacagcaatcaggcatcaatagcacaatttcttttaaaagaagaa
tgcacagaattaggtgttctatggtgttggcctcgtgttgtgggtttgtg
tccgtgagtgtaggcgtccatggcagtcagagagtgtcagattctttgga
gctggagttacagtagtgtgagctgtctgatattggtactgaaatcaaag
ttggctctttattaagagagtctcctactctgctgagatcagctttccag
ctcaagcttaacctgtttgaatccgacaagcaccttgtagaaattgaagc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_20521235_20522094
seq2: B6Ng01-005J02.b_46_912 (reverse)

seq1  AGCACCA-GGGCTGGATCTGAA--TTAAATTACTTAAG-TCTCAATC-AG  45
      ||||||| |||| |||||||||  | |||| ||||||| |||||||| ||
seq2  AGCACCAGGGGCGGGATCTGAAATTAAAATAACTTAAGATCTCAATCAAG  50

seq1  TACAAG-AGGGAGCAGAAATACATGTATGCATACTACCTGTGTGATAGTT  94
      |||||| ||||||||||||| ||||||||||||||| |||||||||||||
seq2  TACAAGAAGGGAGCAGAAATCCATGTATGCATACTA-CTGTGTGATAGTT  99

seq1  ATCCAACATGACTAAA-GGCATTATAAGTCATGGTAAAGTTTAGTGATTT  143
      ||||| || ||||||| |||||||||||||||||||||||||||||||||
seq2  ATCCACCAAGACTAAAGGGCATTATAAGTCATGGTAAAGTTTAGTGATTT  149

seq1  TAAAACAAAC-AAACAAAACCACAGCCATCATCACCACATAAACAAAATG  192
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAACAAAACAAAACCACAGCCATCATCACCACATAAACAAAATG  199

seq1  AAATAAAACAAAAATCCCCTGTGTTGCTTGACACTGCAATTGAAAGACTA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACAAAAATCCCCTGTGTTGCTTGACACTGCAATTGAAAGACTA  249

seq1  ACTCCATCAGTCGAAGAGTATATAAAAGAGCCATTTGCTCTGTCTAAAAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATCAGTCGAAGAGTATATAAAAGAGCCATTTGCTCTGTCTAAAAC  299

seq1  ATCACAATAACGGCCCTACCACGCCTGGGGTAAGTAGTAAGAGATTTCAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATAACGGCCCTACCACGCCTGGGGTAAGTAGTAAGAGATTTCAC  349

seq1  AACCCACCCAAGAGAGCAAACGCAGTGCCCTTTGAGAATTGTACGCTCAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCCAAGAGAGCAAACGCAGTGCCCTTTGAGAATTGTACGCTCAG  399

seq1  ATAAGGGCAGAAGGAAATAAGTAACTCTCCTGCTGTAAGGATGCACATCC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGCAGAAGGAAATAAGTAACTCTCCTGCTGTAAGGATGCACATCC  449

seq1  AAGGACACAGAGAAAGCAGAGCTACTGAATGTGGCGTTTGTTTCTTTTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACACAGAGAAAGCAGAGCTACTGAATGTGGCGTTTGTTTCTTTTTT  499

seq1  ATCATCTCACAATGAGATTGGCCTTCAAACTGCAGAAGGTGCAACAAATA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCACAATGAGATTGGCCTTCAAACTGCAGAAGGTGCAACAAATA  549

seq1  CAGCCAGAAAAAGGCTGAGGCCCACAAGCATCAGAGATGCAGAGAAGGGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGAAAAAGGCTGAGGCCCACAAGCATCAGAGATGCAGAGAAGGGA  599

seq1  AGTCTCAATACCTTTGAGTAGCTTTCAATTAGTGGGAGGTTAATTTCCTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAATACCTTTGAGTAGCTTTCAATTAGTGGGAGGTTAATTTCCTG  649

seq1  CAACCAGAACCATGGACACGTGTTGGGAACTAAAAAGGGGGCCCTGGGGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGAACCATGGACACGTGTTGGGAACTAAAAAGGGGGCCCTGGGGA  699

seq1  AGAGAGAGAAGGGAAAAACCCACACCCCGCCAGAGTTTTACCTATTCTCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAAGGGAAAAACCCACACCCCGCCAGAGTTTTACCTATTCTCT  749

seq1  GGTCTGTCAGGAGTCGGGGCAGGGGGCTGCTATCTACCTTCCACTCATCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTCAGGAGTCGGGGCAGGGGGCTGCTATCTACCTTCCACTCATCC  799

seq1  CCCAGTGAGCATCTAAGTCTCTGACCCACTTTTCGGGGGGTGGCTAGGTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGAGCATCTAAGTCTCTGACCCACTTTTCGGGGGGTGGCTAGGTG  849

seq1  CAACCCTAACTGGAATTC  860
      ||||||||||||||||||
seq2  CAACCCTAACTGGAATTC  867

seq1: chr10_20391775_20392976
seq2: B6Ng01-005J02.g_68_1267

seq1  GAATTCCTGCCCATACCATGTGGTATTTAAATATAAATAAGACATTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCCATACCATGTGGTATTTAAATATAAATAAGACATTTGGT  50

seq1  GTGATATGAACAAACCCAGGAGCAGAACAATTTAATCCTGAGGACCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATGAACAAACCCAGGAGCAGAACAATTTAATCCTGAGGACCTCTT  100

seq1  ATTTAGTTGCTAATATTTTTTTATAAAATATGTTTTATTGAAATACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTGCTAATATTTTTTTATAAAATATGTTTTATTGAAATACAAAA  150

seq1  GGGAATCATAATAATTAATTTATAATTTGTTTTATGTTTTGCTTTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCATAATAATTAATTTATAATTTGTTTTATGTTTTGCTTTGGGAA  200

seq1  ATTACAAGTTGTTTTCTGACGTACTTCTCATGTATCTTACCTTTTAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGTTGTTTTCTGACGTACTTCTCATGTATCTTACCTTTTAATGT  250

seq1  TTGTGTAATAATTCTCCTAAGAACACTTTTCAGTATACTCGTTTTTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAATAATTCTCCTAAGAACACTTTTCAGTATACTCGTTTTTAATT  300

seq1  TCCATGACCACTCAAGCCCAGCGATGCCATTAAACTCCATCCCCCAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACCACTCAAGCCCAGCGATGCCATTAAACTCCATCCCCCAATTC  350

seq1  TTCTAAGCATATCAGTCTTTATATACGAAATTCCCTTACAATCACTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGCATATCAGTCTTTATATACGAAATTCCCTTACAATCACTTTTA  400

seq1  ACAGGAACTCAGTATTTTGATTCTATTTTAATCAAAATAGATGCTGTCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAACTCAGTATTTTGATTCTATTTTAATCAAAATAGATGCTGTCGT  450

seq1  TTACAGCATTTCTAGATCAGTTTGGGTCGTGCAGACTACAGTGGAAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCATTTCTAGATCAGTTTGGGTCGTGCAGACTACAGTGGAAATTC  500

seq1  CAAAGACTCAAAATTCCTTTGGATTGACATCATCCCTAAAATATACTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTCAAAATTCCTTTGGATTGACATCATCCCTAAAATATACTGAG  550

seq1  AGATTCCTAAATATCAGAGGCATTTTTCCATGCCCCTGTCCTACAATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTAAATATCAGAGGCATTTTTCCATGCCCCTGTCCTACAATGCT  600

seq1  ATATTGTGTTTCTTTGCATTATGTTCCTGGAGGAAGTGTGCTGCAGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGTTTCTTTGCATTATGTTCCTGGAGGAAGTGTGCTGCAGAGGA  650

seq1  AAAATGCACTGAGCAGGAAACGCAGGCCGTAGAGTTGAAGCGTTCTGCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCACTGAGCAGGAAACGCAGGCCGTAGAGTTGAAGCGTTCTGCGG  700

seq1  TCGTGTGATCTTAGGCAAGTGACAACCACTTGTTTTTCTCAGTAACATCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTGATCTTAGGCAAGTGACAACCACTTGTTTTTCTCAGTAACATCG  750

seq1  CACTGATAGAGACTGCGCTCAGACAGCTCTTGCAAGGATGGAATGGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATAGAGACTGCGCTCAGACAGCTCTTGCAAGGATGGAATGGGCAG  800

seq1  GAGTCCTTTAACTCCATGTCTGTCAGGAGGAGCAGATGGAGCTGAACGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTTTAACTCCATGTCTGTCAGGAGGAGCAGATGGAGCTGAACGCT  850

seq1  GCTTTGTACATCAATGC-TTCAGATTGCCAAGTAACAGC-CCTTACTTAA  898
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  GCTTTGTACATCAATGCTTTCAGATTGCCAAGTAACAGCTCCTTACTTAA  900

seq1  AAC-TCACAGCAATCAGGCATCAATAAGCAC-ATTTCTTTTAAAAGAAG-  945
      ||| ||||||||||||||||||||| ||||| ||||||||||||||||| 
seq2  AACTTCACAGCAATCAGGCATCAAT-AGCACAATTTCTTTTAAAAGAAGA  949

seq1  ATGCACAGAATTAGGTG-TCTAT-GTGTTGG-CTCGTG-TGTGGGTTTGT  991
      ||||||||||||||||| ||||| ||||||| |||||| |||||||||||
seq2  ATGCACAGAATTAGGTGTTCTATGGTGTTGGCCTCGTGTTGTGGGTTTGT  999

seq1  GTCCGTGAGTGTAGGCGCCCATGGAAGTCAGAAGAAGGTGTCAGATCCCT  1041
      ||||||||||||||||| |||||| |||||| |||  ||||||||| | |
seq2  GTCCGTGAGTGTAGGCGTCCATGGCAGTCAG-AGA--GTGTCAGATTCTT  1046

seq1  TGGAGCTGGAGTTACAGGTAGTTGTGAGCTGTCTGATATGGGTACTGGAA  1091
      |||||||||||||||| |||| ||||||||||||||||| |||||| |||
seq2  TGGAGCTGGAGTTACA-GTAG-TGTGAGCTGTCTGATATTGGTACT-GAA  1093

seq1  ATCAAAGTTGGGTCCTTTATAAGAGAGGTCCCTACTCCTGCTGAG-TCAG  1140
      ||||||||||| || ||  ||||||||   |||||| |||||||| ||||
seq2  ATCAAAGTTGGCTCTTTATTAAGAGAGTCTCCTACT-CTGCTGAGATCAG  1142

seq1  CTTTCCAGCCCCAGCTAAACACTGTTTGGATACGAACAAGCCACCTTGGT  1190
      ||||||||| | |||| ||| ||||||| || || ||||| |||||| ||
seq2  CTTTCCAGCTCAAGCTTAAC-CTGTTTGAATCCG-ACAAG-CACCTT-GT  1188

seq1  AGAAATTGAAGC  1202
      ||||||||||||
seq2  AGAAATTGAAGC  1200