BAC Information

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BAC

Clone NameB6Ng01-006E03
Chromosome10 (Build37)
Map Location 64,282,073 - 64,471,061
singlet/doubletdoublet
Overlap geneCtnna3
Upstream geneLrrtm3
Downstream geneLOC665206, LOC216036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006E03.bB6Ng01-006E03.g
ACCDH843169DH843170
length981659
definitionDH843169|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E03, 5' end.DH843170|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,470,076 - 64,471,061)(64,282,073 - 64,282,730)
sequence
gaattcaggtgcagtagccaggaggtccaaaagaaaacaaggtaaccaaa
accttggattatatagagaagaacagctgggggaaggactggagagtttg
gggtagagcccaaggagtgagagccacaccctgtcactggtagagactga
gggatgctgggagaacctggcagccagacctgctttgatatgttaaatag
gcacctggctatttgtcccagggtttcagacttaacaataactgtgagaa
aaagagcagcaaaagaagaaatggagctttttttctctgcataaatgttg
tctcctgatgtgtgtgatacacataaataaaactgacaatgcggccattt
tcctaatttcctttaaaaatactgaaatcatatgtgagctatgttctttc
tgactgggttcctttgaacatcctaatcactgaacaatttctgactttac
aacaaaaaaaaatgtctctttggtaactgacaatgtcctagttattgctg
tgttgactgaggacaggatgattaaaacacggggtgtcattaaaattcag
gtgctagggctgattttgtccacccagagaattgcttcttacaatcctga
aagaggagggtccatttcaccagtcaaaatcctcagatctcatttctctc
acagtacagaagtctgtatccatgggaactataatctctagcatcaaaac
gagacaccaaaggagataagaatgtttggagaggtagaaagaaagaaact
ctggtagaaattaaactctaaaattgaagtcctgaaggaaatgttaggct
atctacatatagggtagcctacaaggaagggaggttggggacattgctaa
agcttagaatttgaacaaagggagacaactgtggagtttgctgagatgtg
aaaggtttttgtcatctaggagatatgtaggcagtaagagggtcctgagg
cagggcagagcaagataagactacccagaaa
gaattcagtgaaaaatgggtaggtgagtgtactagtgggtatatgaatga
aacaaaaatacaaacccagattcggtgctatctttcccaggagtgctaaa
ccaacttcttactcagttctttgtgtattaaagcaataattcatgtggat
tgttagcttctttatagagaggattcagagctaatggttaaaggaaaatt
ttcatttagataaagtagggatggagggttggggtgtcattctggagata
tccctactcatacatagtcttcaatattctgggaagtctttttgctcact
atgctgattgttttaaaatcagccaaagcaatttatacacatgcagatga
gaatactgcctgaggtgcaagttgtcgaggatgcagacaacagaatatca
aactgaaaactttggaatcgaactaaaattttcctttatccaaatcacac
agtatcttcacaggaagatgcatgtaaattaattcaataattcatctatt
ttttacaaaacttagtaaacaaaacttgagcattgaataattctatatct
tatgtaatttaaaaaaaataattttctgacaggcttcaatgttcaatact
tcatgtgggctatgtctctaaatattttttaacgttaatctctaacagtt
catgttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_64470076_64471061
seq2: B6Ng01-006E03.b_49_1029 (reverse)

seq1  TTTCTGGGTAGTCTTATCTTGCTCTGCCCTGCCCTCAGGACCCTCTTAAC  50
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  TTTCTGGGTAGTCTTATCTTGCTCTGCCCTG-CCTCAGGACCCTCTT-AC  48

seq1  TGCCTACAATATTCTCCTAGATGACAAAAATCCTTTCACATCTCAGCAAA  100
      ||||||| ||| |||||||||||||||||| |||||||||||||||||||
seq2  TGCCTAC-ATA-TCTCCTAGATGACAAAAA-CCTTTCACATCTCAGCAAA  95

seq1  CTCCACAGTTGTCTCCCTTTGTTCAAATTCTAAGCTTTAGCAATGTCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGTTGTCTCCCTTTGTTCAAATTCTAAGCTTTAGCAATGTCCCC  145

seq1  AACCTCCCTTCCTTGTAGGCTACCCTATATGTAGATAGCCTAACATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCCTTCCTTGTAGGCTACCCTATATGTAGATAGCCTAACATTTCC  195

seq1  TTCAGGACTTCAATTTTAGAGTTTAATTTCTACCAGAGTTTCTTTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACTTCAATTTTAGAGTTTAATTTCTACCAGAGTTTCTTTCTTTC  245

seq1  TACCTCTCCAAACATTCTTATCTCCTTTGGTGTCTCGTTTTGATGCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTCCAAACATTCTTATCTCCTTTGGTGTCTCGTTTTGATGCTAGA  295

seq1  GATTATAGTTCCCATGGATACAGACTTCTGTACTGTGAGAGAAATGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAGTTCCCATGGATACAGACTTCTGTACTGTGAGAGAAATGAGAT  345

seq1  CTGAGGATTTTGACTGGTGAAATGGACCCTCCTCTTTCAGGATTGTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATTTTGACTGGTGAAATGGACCCTCCTCTTTCAGGATTGTAAGA  395

seq1  AGCAATTCTCTGGGTGGACAAAATCAGCCCTAGCACCTGAATTTTAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTCTCTGGGTGGACAAAATCAGCCCTAGCACCTGAATTTTAATGA  445

seq1  CACCCCGTGTTTTAATCATCCTGTCCTCAGTCAACACAGCAATAACTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCGTGTTTTAATCATCCTGTCCTCAGTCAACACAGCAATAACTAGG  495

seq1  ACATTGTCAGTTACCAAAGAGACATTTTTTTTTGTTGTAAAGTCAGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTCAGTTACCAAAGAGACATTTTTTTTTGTTGTAAAGTCAGAAAT  545

seq1  TGTTCAGTGATTAGGATGTTCAAAGGAACCCAGTCAGAAAGAACATAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTGATTAGGATGTTCAAAGGAACCCAGTCAGAAAGAACATAGCT  595

seq1  CACATATGATTTCAGTATTTTTAAAGGAAATTAGGAAAATGGCCGCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGATTTCAGTATTTTTAAAGGAAATTAGGAAAATGGCCGCATTG  645

seq1  TCAGTTTTATTTATGTGTATCACACACATCAGGAGACAACATTTATGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTATTTATGTGTATCACACACATCAGGAGACAACATTTATGCAG  695

seq1  AGAAAAAAAGCTCCATTTCTTCTTTTGCTGCTCTTTTTCTCACAGTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAGCTCCATTTCTTCTTTTGCTGCTCTTTTTCTCACAGTTATT  745

seq1  GTTAAGTCTGAAACCCTGGGACAAATAGCCAGGTGCCTATTTAACATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTCTGAAACCCTGGGACAAATAGCCAGGTGCCTATTTAACATATC  795

seq1  AAAGCAGGTCTGGCTGCCAGGTTCTCCCAGCATCCCTCAGTCTCTACCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGTCTGGCTGCCAGGTTCTCCCAGCATCCCTCAGTCTCTACCAG  845

seq1  TGACAGGGTGTGGCTCTCACTCCTTGGGCTCTACCCCAAACTCTCCAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGGTGTGGCTCTCACTCCTTGGGCTCTACCCCAAACTCTCCAGTC  895

seq1  CTTCCCCCAGCTGTTCTTCTCTATATAATCCAAGGTTTTGGTTACCTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCAGCTGTTCTTCTCTATATAATCCAAGGTTTTGGTTACCTTGT  945

seq1  TTTCTTTTGGACCTCCTGGCTACTGCACCTGAATTC  986
      ||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGGACCTCCTGGCTACTGCACCTGAATTC  981

seq1: chr10_64282073_64282730
seq2: B6Ng01-006E03.g_66_724

seq1  GAATTCAGTGAAAAATGGGTAGGTGAGTGTACTAGTGGGTATATGAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAAAAATGGGTAGGTGAGTGTACTAGTGGGTATATGAATGA  50

seq1  AACAAAAATACAAACCCAGATTCGGTGCTATCTTTCCCAGGAGTGCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATACAAACCCAGATTCGGTGCTATCTTTCCCAGGAGTGCTAAA  100

seq1  CCAACTTCTTACTCAGTTCTTTGTGTATTAAAGCAATAATTCATGTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTCTTACTCAGTTCTTTGTGTATTAAAGCAATAATTCATGTGGAT  150

seq1  TGTTAGCTTCTTTATAGAGAGGATTCAGAGCTAATGGTTAAAGGAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCTTCTTTATAGAGAGGATTCAGAGCTAATGGTTAAAGGAAAATT  200

seq1  TTCATTTAGATAAAGTAGGGATGGAGGGTTGGGGTGTCATTCTGGAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAGATAAAGTAGGGATGGAGGGTTGGGGTGTCATTCTGGAGATA  250

seq1  TCCCTACTCATACATAGTCTTCAATATTCTGGGAAGTCTTTTTGCTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACTCATACATAGTCTTCAATATTCTGGGAAGTCTTTTTGCTCACT  300

seq1  ATGCTGATTGTTTTAAAATCAGCCAAAGCAATTTATACACATGCAGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATTGTTTTAAAATCAGCCAAAGCAATTTATACACATGCAGATGA  350

seq1  GAATACTGCCTGAGGTGCAAGTTGTCGAGGATGCAGACAACAGAATATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTGCCTGAGGTGCAAGTTGTCGAGGATGCAGACAACAGAATATCA  400

seq1  AACTGAAAACTTTGGAATCGAACTAAAATTTTCCTTTATCCAAATCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAACTTTGGAATCGAACTAAAATTTTCCTTTATCCAAATCACAC  450

seq1  AGTATCTTCACAGGAAGATGCATGTAAATTAATTCAATAATTCATCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTTCACAGGAAGATGCATGTAAATTAATTCAATAATTCATCTATT  500

seq1  TTTTACAAAACTTAGTAAACAAAACTTGAGCATTGAATAATTCTATATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAAACTTAGTAAACAAAACTTGAGCATTGAATAATTCTATATCT  550

seq1  TATGTAATTTAAAAAAAATAATTTTCTGACAGGCTTCAATGTTCAATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATTTAAAAAAAATAATTTTCTGACAGGCTTCAATGTTCAATACT  600

seq1  TCATGTGGGCTATGTCTCTAAATATTTTTTAACG-TAATCTCTAACAGTT  649
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCATGTGGGCTATGTCTCTAAATATTTTTTAACGTTAATCTCTAACAGTT  650

seq1  CATGTTGTT  658
      |||||||||
seq2  CATGTTGTT  659