BAC Information

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BAC

Clone NameB6Ng01-006O09
Chromosome4 (Build37)10 (Build37)
Map Location 87,390,108 - 87,391,307104,054,545 - 104,054,696
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG624685, Dennd4c, Rps6, Asah3l, Slc24a2
Downstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006O09.bB6Ng01-006O09.g
ACCDH843628DH843629
length1,191152
definitionDH843628|Mus musculus domesticus DNA, BAC clone: B6Ng01-006O09, 5' end.DH843629|Mus musculus domesticus DNA, BAC clone: B6Ng01-006O09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,390,108 - 87,391,307)(104,054,545 - 104,054,696)
sequence
gaattcaccctgctctagttaaacttgtaaaatcaagcctcccacttcac
taaatgatgtgtgattctgctatgcaatctgagcattataatggtcagaa
tttattggatacctgaaacgggccaggcactctactaagtgttaagagca
atctaatgctcataattccccaagatcaatgttggtgcttagcttcatct
gttacctccacgccctcctacactccctaatctcaagtcacaaggtaaaa
ggacaccatctcatctttctgctgcttaactggactttaataggaatgca
tgcaagtggtttaaacccagagaattgcagtgtgaggtctcctttccatt
cttctgcccctgttgtactatttccatactgaaggcagccacaggcactg
gcttctcatagaaataaaaatatgtagattcctttttcagaaattgtaca
ttattcttatcatttaaaatagtgtacatgatatctcagaggtttttagt
tattatcagtgaatgatctttgagtaaattctttgaaactttaagattca
attattaaaccaacactcacagatggttgttcagactactgctagtcctt
tgctgacataaacagcgctgccaggatatctttgaggccctttatccatg
cataaacactagtgtattcataggacacattttcaaaagtataacagctt
agctaaagagtgtgtttagcctttatttttttacacgctcaacttgccct
gcactaaggttgtatcgatttataatcccagtgggacatgctttcagtta
atgtcctcagccacagacacggtctctttaaaagactttgatacttgcta
atttgaaatatgagaaatgccgtttatttggtttttataaatacttttct
gaatattataatttatttatttatttatttattatttattgcagagcctg
tgtgtccaggagaagtgcatacatatgggagtgtaaatgtgattgtgagt
gccttgtggtgcttcctatatgcaggtcctctgccctaatagatttttct
attttgtgcttggcctcttttactgacatgcatgttagtaatttagaata
atcaaccctttatatgtatgtccaaatggaggctagcatcattgccttgg
gtaaccgagagggattgtaatatattatgagttcagatttc
cacatataaccagagacagtgaaacttatagaggagaaagtgggaaaaag
cctcaaagatatgggcacaggggaaaaattcctgaatagaacagcaatgg
cttgtgctgtaagatcaagaattgacacatgggacctcataaaattgcaa
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87390108_87391307
seq2: B6Ng01-006O09.b_47_1237 (reverse)

seq1  GAAA-CTGAACTTCATAAAATTATA-TACAATCCCTC-CTGTATCAAAAG  47
      |||| |||||| ||||||   |||| ||||||||||| | ||  |  |||
seq2  GAAATCTGAAC-TCATAA---TATATTACAATCCCTCTCGGTTACCCAAG  46

seq1  GCAATGATAGCTAAGCATCATTTGTAACATACATAATAAAGGTTTGATTA  97
      |||||||| ||||  |  ||||||  |||||||| ||||||| |||||||
seq2  GCAATGAT-GCTAGCCTCCATTTG-GACATACAT-ATAAAGGGTTGATTA  93

seq1  -TCTAAATATACCTAAACATGCATGTCAGTTAAAAAGAGGCCCAAGCCAC  146
       ||||||| |||   |||||||||||||||  |||||||| ||||| |||
seq2  TTCTAAAT-TAC--TAACATGCATGTCAGT--AAAAGAGG-CCAAG-CAC  136

seq1  ATAATAG-AAAATCTATTTAGGGCAGAGGACCTGCATATAGGAAGCA-CA  194
      | ||||| |||||||| |||||||||||||||||||||||||||||| ||
seq2  AAAATAGAAAAATCTA-TTAGGGCAGAGGACCTGCATATAGGAAGCACCA  185

seq1  C-AGGCACTCACAATCACATTTACACTCCCATATGTATGCAC-TCTCCTG  242
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAAGGCACTCACAATCACATTTACACTCCCATATGTATGCACTTCTCCTG  235

seq1  GACACACAGGCTCTGCAATAAATAAATAAATAAATAAATAAATAAATTAT  292
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GACACACAGGCTCTGCAATAAAT-AATAAATAAATAAATAAATAAATTAT  284

seq1  AATATTCAGAAAAGTATTTAATAAAAACCAAATAAACGGCATTTCTCATA  342
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATATTCAGAAAAGTATTT-ATAAAAACCAAATAAACGGCATTTCTCATA  333

seq1  TTTCAAATTAGCAAGTATCAAAGTCTTTTAAAGAGACCGTGTCTGTGGCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATTAGCAAGTATCAAAGTCTTTTAAAGAGACCGTGTCTGTGGCT  383

seq1  GAGGACATTAACTGAAAGCATGTCCCACTGGGATTATAAATCGATACAAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATTAACTGAAAGCATGTCCCACTGGGATTATAAATCGATACAAC  433

seq1  CTTAGTGCAGGGCAAGTTGAGCGTGTAAAAAAATAAAGGCTAAACACACT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGCAGGGCAAGTTGAGCGTGTAAAAAAATAAAGGCTAAACACACT  483

seq1  CTTTAGCTAAGCTGTTATACTTTTGAAAATGTGTCCTATGAATACACTAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTAAGCTGTTATACTTTTGAAAATGTGTCCTATGAATACACTAG  533

seq1  TGTTTATGCATGGATAAAGGGCCTCAAAGATATCCTGGCAGCGCTGTTTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGCATGGATAAAGGGCCTCAAAGATATCCTGGCAGCGCTGTTTA  583

seq1  TGTCAGCAAAGGACTAGCAGTAGTCTGAACAACCATCTGTGAGTGTTGGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCAAAGGACTAGCAGTAGTCTGAACAACCATCTGTGAGTGTTGGT  633

seq1  TTAATAATTGAATCTTAAAGTTTCAAAGAATTTACTCAAAGATCATTCAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATTGAATCTTAAAGTTTCAAAGAATTTACTCAAAGATCATTCAC  683

seq1  TGATAATAACTAAAAACCTCTGAGATATCATGTACACTATTTTAAATGAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATAACTAAAAACCTCTGAGATATCATGTACACTATTTTAAATGAT  733

seq1  AAGAATAATGTACAATTTCTGAAAAAGGAATCTACATATTTTTATTTCTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAATGTACAATTTCTGAAAAAGGAATCTACATATTTTTATTTCTA  783

seq1  TGAGAAGCCAGTGCCTGTGGCTGCCTTCAGTATGGAAATAGTACAACAGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCCAGTGCCTGTGGCTGCCTTCAGTATGGAAATAGTACAACAGG  833

seq1  GGCAGAAGAATGGAAAGGAGACCTCACACTGCAATTCTCTGGGTTTAAAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGAATGGAAAGGAGACCTCACACTGCAATTCTCTGGGTTTAAAC  883

seq1  CACTTGCATGCATTCCTATTAAAGTCCAGTTAAGCAGCAGAAAGATGAGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCATGCATTCCTATTAAAGTCCAGTTAAGCAGCAGAAAGATGAGA  933

seq1  TGGTGTCCTTTTACCTTGTGACTTGAGATTAGGGAGTGTAGGAGGGCGTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCCTTTTACCTTGTGACTTGAGATTAGGGAGTGTAGGAGGGCGTG  983

seq1  GAGGTAACAGATGAAGCTAAGCACCAACATTGATCTTGGGGAATTATGAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAACAGATGAAGCTAAGCACCAACATTGATCTTGGGGAATTATGAG  1033

seq1  CATTAGATTGCTCTTAACACTTAGTAGAGTGCCTGGCCCGTTTCAGGTAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGATTGCTCTTAACACTTAGTAGAGTGCCTGGCCCGTTTCAGGTAT  1083

seq1  CCAATAAATTCTGACCATTATAATGCTCAGATTGCATAGCAGAATCACAC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAATTCTGACCATTATAATGCTCAGATTGCATAGCAGAATCACAC  1133

seq1  ATCATTTAGTGAAGTGGGAGGCTTGATTTTACAAGTTTAACTAGAGCAGG  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTAGTGAAGTGGGAGGCTTGATTTTACAAGTTTAACTAGAGCAGG  1183

seq1  GTGAATTC  1200
      ||||||||
seq2  GTGAATTC  1191

seq1: chr10_104054545_104054696
seq2: B6Ng01-006O09.g_74_225 (reverse)

seq1  CTTTGCAATTTTATGAGGTCCCATTTATCAACTCTCTATCTTACAGCACA  50
      |||||||||||||||||||||||| | |||| |||  |||||||||||||
seq2  CTTTGCAATTTTATGAGGTCCCATGTGTCAATTCTTGATCTTACAGCACA  50

seq1  AGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTCGA  100
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  AGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATCTTTGA  100

seq1  GGCTTTTCCCTACTTTTTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATG  150
      ||||||| || ||||| |||||||||||||||| ||||||||||| ||||
seq2  GGCTTTTTCCCACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTATATG  150

seq1  TG  152
      ||
seq2  TG  152