BAC Information

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BAC

Clone NameB6Ng01-007F09
Chromosome10 (Build37)
Map Location 114,825,142 - 114,826,008
singlet/doubletsinglet
Overlap geneCcdc131
Upstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2
Downstream geneLgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007F09.bB6Ng01-007F09.g
ACCDH843936DH843937
length305864
definitionDH843936|Mus musculus domesticus DNA, BAC clone: B6Ng01-007F09, 5' end.DH843937|Mus musculus domesticus DNA, BAC clone: B6Ng01-007F09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttgtttagctctttgccccatttttaatggggttatttgaatttctgga
gtccagcttattgagttctttgtatatattggatattagtcccctatcgg
atttaggattggtaaaaatccttccccaatcttttggtggcctttttgtc
ttattgacagtagctgcatatgtagcagaagatggcctaatcagccatca
ttgggaggagaggcccttcgtcttgcaaagattatatgccccaggggaat
gccagggccaggaagttggagtgggtgggttggagagcagggcaggatgg
gggta
gaattcactgtgtagcctggctggctcaaagctatggcagtgaacttgca
tcagcctctcatggataactgccattttaaacttggaaatcagatgagca
ttaacacagttagcgcagcgtcttagatgaggaaggtcatcccatttctc
tttaggctgcagctaaggatgaaaagtggctcttcctttaaaccatcagg
tttaaaagtcatttaaaaatcactctttctgtctctctgtccctcgtcct
ctctctgtgtgtctctgtctctctgtcctccacccccagtagtgaagatt
gaatccaaggcttgattactaaaattacaacactggttcttttaaaattt
tgtttggagaaagaatcttgcaaaattgctcccaattttgtctcagcctc
tgtggtatttgggatcaaaggcatttggcaccagatgtaatacaaaagca
gctttttaaaggtttacctttagtaattttaattacggttatgtgtatac
attcagtcacatgagtaccccaggacaccagagatgtcagattccccagg
gctggaattacaaggcagtcatcagcctgctgacatggatgctggggatt
gaactcgggtcctttgaaagtgctatatgtacacagcagctaagccatcc
ttcccagcccacacagttgttatgctgtagaggtttccttctgtcactgg
gcaatagcatcatcaactggtgcataaaaatgaaggtagaaggagcatct
tgacaaactttagaatcagattaggtgaacaggtgttggcttttcatcta
attatgctgtaagaggcgggaagggattttctttttttttttttaattta
agatacggaatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_114825142_114826008
seq2: B6Ng01-007F09.g_67_930

seq1  GAATTCACTGTGTAGCCTGGCTGGCTCAAAGCTATGGCAGTGAACTTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTAGCCTGGCTGGCTCAAAGCTATGGCAGTGAACTTGCA  50

seq1  TCAGCCTCTCATGGATAACTGCCATTTTAAACTTGGAAATCAGATGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCTCATGGATAACTGCCATTTTAAACTTGGAAATCAGATGAGCA  100

seq1  TTAACACAGTTAGCGCAGCGTCTTAGATGAGGAAGGTCATCCCATTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACAGTTAGCGCAGCGTCTTAGATGAGGAAGGTCATCCCATTTCTC  150

seq1  TTTAGGCTGCAGCTAAGGATGAAAAGTGGCTCTTCCTTTAAACCATCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCTGCAGCTAAGGATGAAAAGTGGCTCTTCCTTTAAACCATCAGG  200

seq1  TTTAAAAGTCATTTAAAAATCACTCTTTCTGTCTCTCTGTCCCTCGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTCATTTAAAAATCACTCTTTCTGTCTCTCTGTCCCTCGTCCT  250

seq1  CTCTCTGTGTGTCTCTGTCTCTCTGTCCTCCACCCCCAGTAGTGAAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTGTGTCTCTGTCTCTCTGTCCTCCACCCCCAGTAGTGAAGATT  300

seq1  GAATCCAAGGCTTGATTACTAAAATTACAACACTGGTTCTTTTAAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAAGGCTTGATTACTAAAATTACAACACTGGTTCTTTTAAAATTT  350

seq1  TGTTTGGAGAAAGAATCTTGCAAAATTGCTCCCAATTTTGTCTCAGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGAGAAAGAATCTTGCAAAATTGCTCCCAATTTTGTCTCAGCCTC  400

seq1  TGTGGTATTTGGGATCAAAGGCATTTGGCACCAGATGTAATACAAAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTATTTGGGATCAAAGGCATTTGGCACCAGATGTAATACAAAAGCA  450

seq1  GCTTTTTAAAGGTTTACCTTTAGTAATTTTAATTACGGTTATGTGTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTAAAGGTTTACCTTTAGTAATTTTAATTACGGTTATGTGTATAC  500

seq1  ATTCAGTCACATGAGTACCCCAGGACACCAGAGATGTCAGATTCCCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTCACATGAGTACCCCAGGACACCAGAGATGTCAGATTCCCCAGG  550

seq1  GCTGGAATTACAAGGCAGTCATCAGCCTGCTGACATGGATGCTGGGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATTACAAGGCAGTCATCAGCCTGCTGACATGGATGCTGGGGATT  600

seq1  GAACTCGGGTCCTTTGAAAGTGCTATATGTACACAGCAGCTAAGCCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCGGGTCCTTTGAAAGTGCTATATGTACACAGCAGCTAAGCCATCC  650

seq1  TTCCCAGCCCACACAGTTGTTATGCTGTAGAGGTTTCCTTCTGTCACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCCCACACAGTTGTTATGCTGTAGAGGTTTCCTTCTGTCACTGG  700

seq1  GCAATAGCATCATCAACTGGTGCATAAAAATGAAGGTAGAAGGAGCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGCATCATCAACTGGTGCATAAAAATGAAGGTAGAAGGAGCATCT  750

seq1  TGACAAACTTTAGAATCAGATTAGGTGAACAGGTGTTGGC-TTTCATCCT  799
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  TGACAAACTTTAGAATCAGATTAGGTGAACAGGTGTTGGCTTTTCAT-CT  799

seq1  AATTATGCTGT-AGAGGCGGGAAGGGATTTTTTTTTTTTTTTTTTTTAAT  848
      ||||||||||| |||||||||||||||  |||| ||||||||||||||||
seq2  AATTATGCTGTAAGAGGCGGGAAGGGA--TTTTCTTTTTTTTTTTTTAAT  847

seq1  TTAAGATACAGTAAATGAC  867
      ||||||||| |  ||||||
seq2  TTAAGATACGG--AATGAC  864