BAC Information

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BAC

Clone NameB6Ng01-007J19
Chromosome10 (Build37)
Map Location 75,835,732 - 75,956,133
singlet/doubletdoublet
Overlap genePcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap
Upstream geneUpb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a
Downstream geneLss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007J19.bB6Ng01-007J19.g
ACCDH844129DH844130
length1,0841,174
definitionDH844129|Mus musculus domesticus DNA, BAC clone: B6Ng01-007J19, 5' end.DH844130|Mus musculus domesticus DNA, BAC clone: B6Ng01-007J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,835,732 - 75,836,833)(75,954,968 - 75,956,133)
sequence
gaattcccatcagaatcccaatgacattcttcagacaagtaggaaaaaga
gtcctaaagctcgtatggaagcagaaagaaaagcgctggagacggcatca
ccactgatggcagactatattatggcaccccagtcacaaaccacaatagc
aagggcacaaaaagagccacatggaccaacagatggaacagaggacccag
aaatgagtccaccttgctacaaccacccaatctttgacagaactgacata
tatcagagataaaaatacccattctttagcaatggtgctggaaaaactag
tatctctctctctctctctctctctctctctctctcacacacacacacac
acacacacacacacacacacacacacacacacacacacccctcctagtat
aagacctaaaagctgggaactctaactactccctggtacagggatgagcc
aaggactcctaagcactaatagcgttggtccccagagccgccgatgacag
gaaggagcttctgcaacatgggggacaacggagtgaagacaacactcaca
gaacgaagggaagacactcgctgactacacacacatgggggacaatggag
tgaagacaacactcacagaacagagggaagacactcactgactacacaca
catgggggacaacggagtgaagacaacagttgcaaaatagatggaagaca
atcgctgactacacacacatgggggattaatgtctagaattagtgaagaa
ctgcaaatactcagcagccaaattacccactaataaatgctctaatccac
tggacaggcagtttgcaagagaagaaatctaagcggttaatgatcgtcct
gaaccatagggaaatgctatttaaaaacgctctgagattctagcccaaca
ccatcacaatggctaccattgacatcgtacatcaatacaggagcagataa
ataaccgtgttccacaaacacacagaattgtgcagtcatgagaaaaatga
aaccatggatctgaagaatgaaatgacgaactggacgtcattaattagta
gtgaataagatactgcggaaaataaattacaaat
gaattcagttcagtggttcagtggttaagaacgcagtgtttttgcaggtt
caggtcccacatggcactgctcataattgcctgtagctacagctccagag
acctaacacccagaggaacctgcacacacatcaatatgccatccaccctg
caacacacacaggcacagatacacacatacaccacataccacacacacac
acacacatacatacatacaaatacacacacacacacacacacacacacac
acacacacacacccttcccttagtcaaatcattagggtggtgaatggtcc
aacagggtcagacgacagaagggctatcagaagtcagaggtcagggctgg
ggcaaactaacctccatgcccgtctataggagcaagacacacccaccgtt
cctcctcagctcgttgcttctcttcctctagtctctgcctttccatggaa
acttcctcagcggcaacgtgcctcagaatgcccgtggtcgcagcagtaat
cagatcctccacagcagcattggaaacgcttaacaaaacaaagcaggcgg
cattcaaacccagacaacagcaagccaccattccctcctgccatgggaga
cttgtctctagaaggcagagacctcaatacatgaaaaccaatcacaggcg
gacaagatggctcagccgtaaagctgccatgctgtgctagcaggtaacct
gaacaatagtaataactaataataaacaaaataaagttcttctaaaaaag
catctacagtaaagaaatacaactatacttactacctcacaaagctgcaa
tcgtcttaatactaatactgtacacatatatagtaatatatacgcatata
tatatatatatatatacacacacacacacatatatacacacacatgcaca
catacacattatacatgatgatttctgtgacttttgcaattataatagct
caaaagaaataattcacaaagaagttcaagagtaatcaagtttaaaaact
aagttaaaaaatattaagtgagttatcaatatctcttaatcaataaaaaa
tcttattttttgtaaatgaaattgaaaactaggtttcacaaagatattgg
cttagatccaggaaatgagagagatcctatgaatacgtaaactaaggaaa
gaaaccgttgcatatcaactccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_75835732_75836833
seq2: B6Ng01-007J19.b_47_1130

seq1  GAATTCCCATCAGAATCCCAATGACATTCTTCAGACAAGTAGGAAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATCAGAATCCCAATGACATTCTTCAGACAAGTAGGAAAAAGA  50

seq1  GTCCTAAAGCTCGTATGGAAGCAGAAAGAAAAGCGCTGGAGACGGCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAAAGCTCGTATGGAAGCAGAAAGAAAAGCGCTGGAGACGGCATCA  100

seq1  CCACTGATGGCAGACTATATTATGGCACCCCAGTCACAAACCACAATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGATGGCAGACTATATTATGGCACCCCAGTCACAAACCACAATAGC  150

seq1  AAGGGCACAAAAAGAGCCACATGGACCAACAGATGGAACAGAGGACCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCACAAAAAGAGCCACATGGACCAACAGATGGAACAGAGGACCCAG  200

seq1  AAATGAGTCCACCTTGCTACAACCACCCAATCTTTGACAGAACTGACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTCCACCTTGCTACAACCACCCAATCTTTGACAGAACTGACATA  250

seq1  TATCAGAGATAAAAATACCCATTCTTTAGCAATGGTGCTGGAAAAACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAGATAAAAATACCCATTCTTTAGCAATGGTGCTGGAAAAACTAG  300

seq1  TATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACAC  350

seq1  ACACACACACACACACACACACACACACACACACACACCCCTCCTAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACCCCTCCTAGTAT  400

seq1  AAGACCTAAAAGCTGGGAACTCTAACTACTCCCTGGTACAGGGATGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTAAAAGCTGGGAACTCTAACTACTCCCTGGTACAGGGATGAGCC  450

seq1  AAGGACTCCTAAGCACTAATAGCGTTGGTCCCCAGAGCCGCCGATGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTCCTAAGCACTAATAGCGTTGGTCCCCAGAGCCGCCGATGACAG  500

seq1  GAAGGAGCTTCTGCAACATGGGGGACAACGGAGTGAAGACAACACTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCTTCTGCAACATGGGGGACAACGGAGTGAAGACAACACTCACA  550

seq1  GAACGAAGGGAAGACACTCGCTGACTACACACACATGGGGGACAATGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGAAGGGAAGACACTCGCTGACTACACACACATGGGGGACAATGGAG  600

seq1  TGAAGACAACACTCACAGAACAGAGGGAAGACACTCACTGACTACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAACACTCACAGAACAGAGGGAAGACACTCACTGACTACACACA  650

seq1  CATGGGGGACAACGGAGTGAAGACAACAGTTGCAAAATAGATGGAAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGGACAACGGAGTGAAGACAACAGTTGCAAAATAGATGGAAGACA  700

seq1  ATCGCTGACTACACACACATGGGGGATTAATGTCTAGAATTAGTGAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTGACTACACACACATGGGGGATTAATGTCTAGAATTAGTGAAGAA  750

seq1  CTGCAAATACTCAGCAGCCAAATTACCCACTAATAAATGCTCTAATCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATACTCAGCAGCCAAATTACCCACTAATAAATGCTCTAATCCAC  800

seq1  TGGACAGGCAGTTTGCAAGAGAAGAAATCTAAGCGGTTAATGATCGTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGGCAGTTTGCAAGAGAAGAAATCTAAGCGGTTAATGATCGTCCT  850

seq1  GAACCATTAGGGAAATGCTATTTAAAAACGCTCTGAGATTCTAGCCCAAC  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCA-TAGGGAAATGCTATTTAAAAACGCTCTGAGATTCTAGCCCAAC  899

seq1  ACCATCACAATGGCTACCATTGACATCGTACATCAATACAGGAGCAGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACAATGGCTACCATTGACATCGTACATCAATACAGGAGCAGATA  949

seq1  AATAAACCGTGTTCCACAAACACAACAGAATTGTGCAGTCATGAAGAAAA  1000
      ||| ||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  AAT-AACCGTGTTCCACAAACAC-ACAGAATTGTGCAGTCATG-AGAAAA  996

seq1  ATGAAACCATGGGATCTGAAGGAAAATGAAAATGAACGAAACTGGACGTC  1050
      |||||||||| ||||||||||   |||| ||||| ||| |||||||||||
seq2  ATGAAACCAT-GGATCTGAAG---AATG-AAATG-ACG-AACTGGACGTC  1039

seq1  ATTATATAGTAAGTGAAATAAGACATACTGCGGAAAATTAAAATTTACAA  1100
      ||||  |||| |||| ||||||  ||||||||||||||   || ||||||
seq2  ATTAATTAGT-AGTG-AATAAG--ATACTGCGGAAAAT---AAATTACAA  1082

seq1  AT  1102
      ||
seq2  AT  1084

seq1: chr10_75954968_75956133
seq2: B6Ng01-007J19.g_68_1241 (reverse)

seq1  CTGGAGTTGTAGTGCAAACTGTTTCTGTCCTTAGTTTAACGTA---CTAG  47
      |||||||||   ||| ||| |||||| |||||||||| |||||    |||
seq2  CTGGAGTTGATATGC-AACGGTTTCTTTCCTTAGTTT-ACGTATTCATAG  48

seq1  GGATTCTCTCA-TTCCTGAATCTAAG-CAATATACCTTGTGAAA-CTAGT  94
      |   ||||||| |||||| ||||||| |||||| | |||||||| |||||
seq2  GATCTCTCTCATTTCCTGGATCTAAGCCAATAT-CTTTGTGAAACCTAGT  97

seq1  TTACCATTTCATTTAC-AAAAATAAGATTATTTA-TGA-TAAGAGATA-T  140
      || | ||||||||||| |||||||||||| |||| ||| ||||||||| |
seq2  TTTCAATTTCATTTACAAAAAATAAGATTTTTTATTGATTAAGAGATATT  147

seq1  GATAAACTCACTTATATATTTTTTAACTTAGTTTTTAAACTTGATTACTC  190
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAT-AACTCACTTA-ATATTTTTTAACTTAGTTTTTAAACTTGATTACTC  195

seq1  TTGAACTCCTTTGTGAATTATATCTTTTGAGCTA-TATAATTGCAAAAGT  239
      ||||||| ||||||||||||| |||||||||||| |||||||||||||||
seq2  TTGAACTTCTTTGTGAATTATTTCTTTTGAGCTATTATAATTGCAAAAGT  245

seq1  CACAG-AATCATCATGTAT-ATGTGTATGTGTGCATGTGTGTGTATATAT  287
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  CACAGAAATCATCATGTATAATGTGTATGTGTGCATGTGTGTGTATATAT  295

seq1  GTGTGTGTGTGTGTATATATATATATATATATATGCGTATATATTACTAT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTATATATATATATATATATATGCGTATATATTACTAT  345

seq1  ATATGTGTACAGTATTAGTATTAAGACGATTGCAGCTTTGTGAGGTAGTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTACAGTATTAGTATTAAGACGATTGCAGCTTTGTGAGGTAGTA  395

seq1  AGTATAGTTGTATTTCTTTACTGTAGATGCTTTTTTAGAAGAACTTTATT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGTTGTATTTCTTTACTGTAGATGCTTTTTTAGAAGAACTTTATT  445

seq1  TTGTTTATTATTAGTTATTACTATTGTTCAGGTTACCTGCTAGCACAGCA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTATTAGTTATTACTATTGTTCAGGTTACCTGCTAGCACAGCA  495

seq1  TGGCAGCTTTACGGCTGAGCCATCTTGTCCGCCTGTGATTGGTTTTCATG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCTTTACGGCTGAGCCATCTTGTCCGCCTGTGATTGGTTTTCATG  545

seq1  TATTGAGGTCTCTGCCTTCTAGAGACAAGTCTCCCATGGCAGGAGGGAAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGGTCTCTGCCTTCTAGAGACAAGTCTCCCATGGCAGGAGGGAAT  595

seq1  GGTGGCTTGCTGTTGTCTGGGTTTGAATGCCGCCTGCTTTGTTTTGTTAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTTGCTGTTGTCTGGGTTTGAATGCCGCCTGCTTTGTTTTGTTAA  645

seq1  GCGTTTCCAATGCTGCTGTGGAGGATCTGATTACTGCTGCGACCACGGGC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTCCAATGCTGCTGTGGAGGATCTGATTACTGCTGCGACCACGGGC  695

seq1  ATTCTGAGGCACGTTGCCGCTGAGGAAGTTTCCATGGAAAGGCAGAGACT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGGCACGTTGCCGCTGAGGAAGTTTCCATGGAAAGGCAGAGACT  745

seq1  AGAGGAAGAGAAGCAACGAGCTGAGGAGGAACGGTGGGTGTGTCTTGCTC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGAGAAGCAACGAGCTGAGGAGGAACGGTGGGTGTGTCTTGCTC  795

seq1  CTATAGACGGGCATGGAGGTTAGTTTGCCCCAGCCCTGACCTCTGACTTC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGACGGGCATGGAGGTTAGTTTGCCCCAGCCCTGACCTCTGACTTC  845

seq1  TGATAGCCCTTCTGTCGTCTGACCCTGTTGGACCATTCACCACCCTAATG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCCCTTCTGTCGTCTGACCCTGTTGGACCATTCACCACCCTAATG  895

seq1  ATTTGACTAAGGGAAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTAAGGGAAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  945

seq1  TGTGTGTATTTGTATGTATGTATGTGTGTGTGTGTGTGTGGTATGTGGTG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATTTGTATGTATGTATGTGTGTGTGTGTGTGTGGTATGTGGTG  995

seq1  TATGTGTGTATCTGTGCCTGTGTGTGTTGCAGGGTGGATGGCATATTGAT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTATCTGTGCCTGTGTGTGTTGCAGGGTGGATGGCATATTGAT  1045

seq1  GTGTGTGCAGGTTCCTCTGGGTGTTAGGTCTCTGGAGCTGTAGCTACAGG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCAGGTTCCTCTGGGTGTTAGGTCTCTGGAGCTGTAGCTACAGG  1095

seq1  CAATTATGAGCAGTGCCATGTGGGACCTGAACCTGCAAAAACACTGCGTT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGAGCAGTGCCATGTGGGACCTGAACCTGCAAAAACACTGCGTT  1145

seq1  CTTAACCACTGAACCACTGAACTGAATTC  1166
      |||||||||||||||||||||||||||||
seq2  CTTAACCACTGAACCACTGAACTGAATTC  1174