BAC Information

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BAC

Clone NameB6Ng01-008J14
Chromosome10 (Build37)
Map Location 42,866,980 - 43,026,950
singlet/doubletdoublet
Overlap geneSobp, 9030612E09Rik, Pdss2
Upstream geneFoxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06
Downstream geneLOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1, Atg5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008J14.bB6Ng01-008J14.g
ACCDH844803DH844804
length9421,170
definitionDH844803|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J14, 5' end.DH844804|Mus musculus domesticus DNA, BAC clone: B6Ng01-008J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,866,980 - 42,867,921)(43,025,663 - 43,026,950)
sequence
gaattcaccattggtgccatctgtgtctagtctaatctttggagaaaaga
tttgtttgattgctagtagacataggactatttagtttttctatcttctt
gcacgtggctgttaagttacattagatgcactgagatttctcttctgaag
tcctaggaattacttccagtggccactcgtcatgtgtaacatcaaaacac
tgatgtctcctaacagaatggaaatcttttaacacacatgtttcatattt
tactagaagacctattattccaactcactgttgttcagagtaaacattaa
caatgaaagactgctccaaacagaaaagaataaagttgttaccatacaac
tgaaatacattatgaacgtgtgtacaaaggtcataatgatactcattatt
atatataattaatttagtattttgtaaagttgttctaaatgtaattaatg
gaatgaagagacagcctactgaatgagggacaaacagttcctagctatta
tatctgacagaggaataatatctaaatgatacaaagaactcaaactaagc
aagaaatcaaacaatccaatcaatgaataggctaatgaaatgaacggaca
gttctcaaaagaccaattacaaatagcctataaacatatgagaacctcac
taacaccagagaaatacagaccagaactatatcaaacctttagatcactt
cagacataatggcagtcactaaggatatagggtggggctgggcatgcagc
acagttgggagagtacttaataataaggacaaagccctgaggtcaatccc
tagctctgcacaaacccaggcgtgatggtgcacacctattattccagcac
tcaggcggcgttaacaaggggcagcgaaagttcgaggtcagcagccacta
cacagcagtttgagaccatcctggtattcatgggaaccctac
gaattctaggtggttgaaaactatatatctgggaactgggtgctgggaac
taaacttgtgtcctctgcaagaccagtaagcgtatgtgtttgtaacagtt
gagtttcctggacagccccttatgttgagttcttgaagcccaacagttgc
cttattgtatataccactaatttagtcataattacttcagttaaaagcgg
agttgaatgaagaattagcagtaatggtgtcatcttacatttggatggat
gctcactttaaaatgctaaactggaggtgactgtggtggcagaggactgc
agtcacaatagtgggggccggacctgtgagggtcacaagttcagggtcag
tgtgggccacacacagaaacttctaggccacttcctgttacataatgaga
tttatctcaaaaaaaaaaaaacaaaaaaaacaaagaaagctaacctaagt
atactatttagcttcattattatctttttttaattagaaaaaaatataca
atttaggtattttcatatgatatttgatcctgaaggccaaaagctaaaaa
ttcattccagccaggtttctgagttgtctgtttgtgtgctttgttcatgt
ttgtgttgtcctgacatcttactacataagcccttcacttatctgtaggt
taaaatacagccattgtgtatgcatattgcaaatacttttaaaatttgat
aattgttttttggtttatagaccctttttccactgaattatttatatagt
caaatattaatatttttaaattgaaatttgtaatttaagatttttgagac
atttttgaatgtcttccctttaaatactagtagcaataatttagcctgat
caagtagcaactgactactatgtaatagatattatggtagggtgctatgg
ctgttatgaaatcctttcaactactcgtagtttaaaagtttgtttatatt
tatgtttgcttgtgtgtgtgcattctatgtgcacgtaggtgtctatggag
tcagagaggtattgggttccctccacccccctcagcagttcagtccaata
gtaaacagcaaacctaatcagttagcaacacctcatccagcagaaactgg
cagcttccaatgaatttggcatgaatcagtaagaactagagagttcttgg
tatcattttcctctcaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_42866980_42867921
seq2: B6Ng01-008J14.b_45_986

seq1  GAATTCACCATTGGTGCCATCTGTGTCTAGTCTAATCTTTGGAGAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTGGTGCCATCTGTGTCTAGTCTAATCTTTGGAGAAAAGA  50

seq1  TTTGTTTGATTGCTAGTAGACATAGGACTATTTAGTTTTTCTATCTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGATTGCTAGTAGACATAGGACTATTTAGTTTTTCTATCTTCTT  100

seq1  GCACGTGGCTGTTAAGTTACATTAGATGCACTGAGATTTCTCTTCTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTGGCTGTTAAGTTACATTAGATGCACTGAGATTTCTCTTCTGAAG  150

seq1  TCCTAGGAATTACTTCCAGTGGCCACTCGTCATGTGTAACATCAAAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGAATTACTTCCAGTGGCCACTCGTCATGTGTAACATCAAAACAC  200

seq1  TGATGTCTCCTAACAGAATGGAAATCTTTTAACACACATGTTTCATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTCCTAACAGAATGGAAATCTTTTAACACACATGTTTCATATTT  250

seq1  TACTAGAAGACCTATTATTCCAACTCACTGTTGTTCAGAGTAAACATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAAGACCTATTATTCCAACTCACTGTTGTTCAGAGTAAACATTAA  300

seq1  CAATGAAAGACTGCTCCAAACAGAAAAGAATAAAGTTGTTACCATACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAGACTGCTCCAAACAGAAAAGAATAAAGTTGTTACCATACAAC  350

seq1  TGAAATACATTATGAACGTGTGTACAAAGGTCATAATGATACTCATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACATTATGAACGTGTGTACAAAGGTCATAATGATACTCATTATT  400

seq1  ATATATAATTAATTTAGTATTTTGTAAAGTTGTTCTAAATGTAATTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATTAATTTAGTATTTTGTAAAGTTGTTCTAAATGTAATTAATG  450

seq1  GAATGAAGAGACAGCCTACTGAATGAGGGACAAACAGTTCCTAGCTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGAGACAGCCTACTGAATGAGGGACAAACAGTTCCTAGCTATTA  500

seq1  TATCTGACAGAGGAATAATATCTAAATGATACAAAGAACTCAAACTAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACAGAGGAATAATATCTAAATGATACAAAGAACTCAAACTAAGC  550

seq1  AAGAAATCAAACAATCCAATCAATGAATAGGCTAATGAAATGAACGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCAAACAATCCAATCAATGAATAGGCTAATGAAATGAACGGACA  600

seq1  GTTCTCAAAAGACCAATTACAAATAGCCTATAAACATATGAGAACCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAAAAGACCAATTACAAATAGCCTATAAACATATGAGAACCTCAC  650

seq1  TAACACCAGAGAAATACAGACCAGAACTATATCAAACCTTTAGATCACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCAGAGAAATACAGACCAGAACTATATCAAACCTTTAGATCACTT  700

seq1  CAGACATAATGGCAGTCACTAAGGATATAGGGTGGGGCTGGGCATGCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATAATGGCAGTCACTAAGGATATAGGGTGGGGCTGGGCATGCAGC  750

seq1  ACAGTTGGGAGAGTACTTAATAATAAGGACAAAGCCCTGAGGTCAATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGGGAGAGTACTTAATAATAAGGACAAAGCCCTGAGGTCAATCCC  800

seq1  TAGCTCTGCACAAACCCAGGCGTGATGGTGCACACCTATATTCCCAGCAC  850
      |||||||||||||||||||||||||||||||||||||||  | |||||||
seq2  TAGCTCTGCACAAACCCAGGCGTGATGGTGCACACCTATTATTCCAGCAC  850

seq1  TCAGGCGGCGTTAACAAGGGGCAGCGAAAGTTCGAGGTCAGCAGCCACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCGGCGTTAACAAGGGGCAGCGAAAGTTCGAGGTCAGCAGCCACTA  900

seq1  CACAGCAAGTTTGAGACCATCCTGGAATTCAT-GGAACCCTAC  942
      |||||| |||||||||||||||||| |||||| ||||||||||
seq2  CACAGC-AGTTTGAGACCATCCTGGTATTCATGGGAACCCTAC  942

seq1: chr10_43025663_43026950
seq2: B6Ng01-008J14.g_70_1239 (reverse)

seq1  CACTTGAGAGGACCTGTGTTCTTTGGAAAGGGTATAAACAAAACCCAACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GACTGTGAACAATGCTCTTGCATTGGTTCGCTTTGCAACGTTTTCTCTGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTCGCTGGTCTTCACTTTGTAGAGAGAAATG-TACCAAAGAACT-TCT  148
                    |||||   ||||  ||||| |||| ||||||| |||
seq2  --------------CACTT--GAGAGGAAAATGATACC-AAGAACTCTCT  33

seq1  TGATTCTTGCTGATTCATGCC-AATTCAGTGGAGCCTTGCAGTTTCTGCT  197
       | ||||| |||||||||||| |||||| ||||  ||  |||||||||||
seq2  AG-TTCTTACTGATTCATGCCAAATTCATTGGAAGCTGCCAGTTTCTGCT  82

seq1  GGATTGAGCTGCTGCT-ACTGATTGTGTTTGCTGTTTACTATTGGACTGA  246
      ||| |||| || |||| |||||||  ||||||||||||||||||||||||
seq2  GGA-TGAGGTGTTGCTAACTGATTAGGTTTGCTGTTTACTATTGGACTGA  131

seq1  ACTGCTTGAGGGGGTGG-GGGAACCCAATACC-CTCTTCTGGCCTCCATA  294
      ||||||   |||||||| |||||||||||||| ||||    | |||||||
seq2  ACTGCTGAGGGGGGTGGAGGGAACCCAATACCTCTCT----GACTCCATA  177

seq1  GACACCTACGTGCACATAGAATGCACACACACAAGCAAACATAAATATAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTACGTGCACATAGAATGCACACACACAAGCAAACATAAATATAA  227

seq1  ACAAACTTTTAAACTACGAGTAGTTGAAAGGATTTCATAACAGCCATAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTTTAAACTACGAGTAGTTGAAAGGATTTCATAACAGCCATAGC  277

seq1  ACCCTACCATTAATATCTATTACATAGTAGTCAGTTGCTACTTGATCAGG  444
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACCA-TAATATCTATTACATAGTAGTCAGTTGCTACTTGATCAGG  326

seq1  CTAAATTATTGCTACTAGTATTTAAAGGGAAGACATTCAAAAATGTCTCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTATTGCTACTAGTATTTAAAGGGAAGACATTCAAAAATGTCTCA  376

seq1  AAAATCTTAAATTACAAATTTCAATTTAAAAATATTAATATTTGACTATA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTAAATTACAAATTTCAATTTAAAAATATTAATATTTGACTATA  426

seq1  TAAATAATTCAGTGGAAAAAGGGTCTATAAACCAAAAAACAATTATCAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATTCAGTGGAAAAAGGGTCTATAAACCAAAAAACAATTATCAAA  476

seq1  TTTTAAAAGTATTTGCAATATGCATACACAATGGCTGTATTTTAACCTAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGTATTTGCAATATGCATACACAATGGCTGTATTTTAACCTAC  526

seq1  AGATAAGTGAAGGGCTTATGTAGTAAGATGTCAGGACAACACAAACATGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGTGAAGGGCTTATGTAGTAAGATGTCAGGACAACACAAACATGA  576

seq1  ACAAAGCACACAAACAGACAACTCAGAAACCTGGCTGGAATGAATTTTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCACACAAACAGACAACTCAGAAACCTGGCTGGAATGAATTTTTA  626

seq1  GCTTTTGGCCTTCAGGATCAAATATCATATGAAAATACCTAAATTGTATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGCCTTCAGGATCAAATATCATATGAAAATACCTAAATTGTATA  676

seq1  TTTTTTTCTAATTAAAAAAAGATAATAATGAAGCTAAATAGTATACTTAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTAATTAAAAAAAGATAATAATGAAGCTAAATAGTATACTTAG  726

seq1  GTTAGCTTTCTTTGTTTTTTTTGTTTTTTTTTTTTTGAGATAAATCTCAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTTCTTTGTTTTTTTTGTTTTTTTTTTTTTGAGATAAATCTCAT  776

seq1  TATGTAACAGGAAGTGGCCTAGAAGTTTCTGTGTGTGGCCCACACTGACC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACAGGAAGTGGCCTAGAAGTTTCTGTGTGTGGCCCACACTGACC  826

seq1  CTGAACTTGTGACCCTCACAGGTCCGGCCCCCACTATTGTGACTGCAGTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTGTGACCCTCACAGGTCCGGCCCCCACTATTGTGACTGCAGTC  876

seq1  CTCTGCCACCACAGTCACCTCCAGTTTAGCATTTTAAAGTGAGCATCCAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCACCACAGTCACCTCCAGTTTAGCATTTTAAAGTGAGCATCCAT  926

seq1  CCAAATGTAAGATGACACCATTACTGCTAATTCTTCATTCAACTCCGCTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTAAGATGACACCATTACTGCTAATTCTTCATTCAACTCCGCTT  976

seq1  TTAACTGAAGTAATTATGACTAAATTAGTGGTATATACAATAAGGCAACT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGAAGTAATTATGACTAAATTAGTGGTATATACAATAAGGCAACT  1026

seq1  GTTGGGCTTCAAGAACTCAACATAAGGGGCTGTCCAGGAAACTCAACTGT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCTTCAAGAACTCAACATAAGGGGCTGTCCAGGAAACTCAACTGT  1076

seq1  TACAAACACATACGCTTACTGGTCTTGCAGAGGACACAAGTTTAGTTCCC  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACACATACGCTTACTGGTCTTGCAGAGGACACAAGTTTAGTTCCC  1126

seq1  AGCACCCAGTTCCCAGATATATAGTTTTCAACCACCTAGAATTC  1288
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAGTTCCCAGATATATAGTTTTCAACCACCTAGAATTC  1170